Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01749 ATGAGTGGTTACGATGTTGATGGCCATAGAAACCATGACAACTACTCATTCTTCAGTTTCCACAACCCATCATCATCGGATCGAAGCTACTCGAACAAAAAAATCTTGGTGATGGCCGTAGCTTCCTTAACAATGGTCATCATCGTGGTCTTGGCCCTTCACATCTACGCAAGGGTGGTTCTGAGACGCCAAGCTCGAAGAAGATTCGCCATTCACCAACTCAGCCTCACCGTACAAGCCCAAGCCCAAGCCCACGAACACAACACAGGCCTGGACCCTAACGTCATAGCCTCTCTCCCCACCTTCATCTACAAACGAAAAAAGAGAGAAGAAGAAGATGAAGATGGCGAGTGTGCTGTGTGTTTGAGTGGTGTAGAAGATGAACAAGAGGTGAGGTTGCTGCCGAATTGCAAGCACAGTTTCCATGTTGCTTGCATAGATACATGGCTGGCTTCTCATTCCACGTGTCCAATTTGTAGAACCAAGGCTGAACCAATCATAGGCCTTCAACTTCAACCTCACCCTCCTGAGCCTCCTATTCTTCTTCATGATGATGCTTCAACTTTTGAAGCTACTTCTGATAATAACAACAATTCTGCTATTGTGGGTAAGAACATTACTGGTTCTTCTGTTTCAAGATTCAGCAGCTCTTTTAGAAGGATTCTAAGTAGGGATAGATCTTCTAGCACAAGAATTCAACCTTCCATAGTTACCCATCTTGATGATCATGATTTAGAGAGCCAGCAATAA 750 0.4467 MSGYDVDGHRNHDNYSFFSFHNPSSSDRSYSNKKILVMAVASLTMVIIVVLALHIYARVVLRRQARRRFAIHQLSLTVQAQAQAHEHNTGLDPNVIASLPTFIYKRKKREEEDEDGECAVCLSGVEDEQEVRLLPNCKHSFHVACIDTWLASHSTCPICRTKAEPIIGLQLQPHPPEPPILLHDDASTFEATSDNNNNSAIVGKNITGSSVSRFSSSFRRILSRDRSSSTRIQPSIVTHLDDHDLESQQ 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01749 249 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Adu08g01749 249 Pfam Ring finger domain 117 160 IPR001841 -
Adu08g01749 249 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 31 247 - -
Adu08g01749 249 PANTHER RING FINGER DOMAIN-CONTAINING 31 247 - -
Adu08g01749 249 SUPERFAMILY RING/U-box 99 169 - -
Adu08g01749 249 SMART ring_2 118 159 IPR001841 -
Adu08g01749 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 166 IPR013083 -
Adu08g01749 249 CDD RING-H2_PA-TM-RING 117 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01749 Adu-Chr8 28738990 28739911 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g01749 1 229 C3H Transcription Factor Family AT2G42360 43.033 8.71e-46 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01749 K19038 - gmx:100780265 182.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01749 08 28738990 28739911 Adu08g01749 08 28738990 28739911 ECH