Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01712 ATGCCTGCACAGAAGCGCCCTTACCCTGACACTCTCGACGACGCCGACGACTCCTCTAACCACCTCTTCCCGCATCGCCACCCCAAGCACCACCGCGACCGCACCCTCAAGCCCCACCATCCAGATGAAGATGCTGCTGGAGCCCACAAGGAAGAGGACGAGCAAGAACAAGAGCAAGGGGATGCTGAGCAAGAAGATGAGGAAGATGAGCAACAAGGAGCAGAAGAAGAAGATGATGATGATGAAGAAGAAGAAGAAGAGGACGATGACGAAGATGAAGATGAAGGTGAGGGAGATGAAGAAGATGAAGAAGAAGGGAAACACAACGACGAGGGTAAACCCGATGGTTACGTATTTGTGTTTGTAGAACTTCTGGAAATTCGTAAGGATGTCCAGTGCCCAATTTGCCTTGGCATTATTAAGAAAACAAGAACTGTCATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAGTCAATGCGACTTGGGAACAATGAATGCCCTGCTTGCCGAACACATTGTGCCAGTCGCCGTTCTTTGAGAGATGATCCGAAATATGATGCTCTTATTGCTGCTTTATATCCAGATATTGAGAAGTACGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGCAATAAGCAGATTCAAGCTTCAATTGCAAAAGTTGTTCAACGGCAGTCTGAGGCACTAGTTAAGAGACGTAAAGATTCACCAAGTGTATTCGTGACAAGATCCCAGCGAAATCAACGAAATGCTTCTAGGAGACAAAATCAAGTGATTGATATTCAAGGATCTGAGGATAATGAGGAGGAAAATGACAATAACGAAAAGGACTCATCATCTGCTGATGAGCGGGGTACAGAGGCGAGGCAAAGAAGGAGAAAGAGATGGACCAGAGTTCGCACCTCTCAGCCCTCATCATCAATGGCAAGTCCTGATGGTGGATGTGCAGAAAGTGACTTGGATAACGGTAGAGAAAATCGAGGACTTTCAAGGCAGGTGTCAAAACCTCGAAAACTTACATGGGGAAGGGGTGGATTTAGAAGTCACACAAGGCATGGAAGTGGCGGTGGTAGTAGTAGCAAAACCTCTCGCAGTAGTCGAGTGTCTAAGATGGTTGATTTTCTCCGAAACTTGGATGAGAATGCTGATGAGTTAGATATCCATCTCATGCTTTATTCTCTGGGCAAACGAGGCGCACCAAGTTTGGAGAAGCCACACCTTTGCTGTCGCCCAACTTTGTCTGTCAAGAACCTTTGCGAATATGTTGCTCGCCAAACACCTGTGCCTGTTGAAGAAGTTGAGATATTGGCAGTTAAAGGATGCAGTGGCACAGATTTCGACAAGTCAACTGATGAGACTTCATCCTTGAAATGTGATGAGCTAACAACTCTGGTTATAGATCCATCTAAATATGAACTAGAAATTTTGCAGGGAGATGAATCTTTAGCAGGGATTAGATCTAAATGCATATCTAAAAGGGAGCATTTGATTCTGGCATACAGGCGGAAAGGGGCACTATAG 1539 0.4581 MPAQKRPYPDTLDDADDSSNHLFPHRHPKHHRDRTLKPHHPDEDAAGAHKEEDEQEQEQGDAEQEDEEDEQQGAEEEDDDDEEEEEEDDDEDEDEGEGDEEDEEEGKHNDEGKPDGYVFVFVELLEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPKYDALIAALYPDIEKYEEEELEFREEEKNRNKQIQASIAKVVQRQSEALVKRRKDSPSVFVTRSQRNQRNASRRQNQVIDIQGSEDNEEENDNNEKDSSSADERGTEARQRRRKRWTRVRTSQPSSSMASPDGGCAESDLDNGRENRGLSRQVSKPRKLTWGRGGFRSHTRHGSGGGSSSKTSRSSRVSKMVDFLRNLDENADELDIHLMLYSLGKRGAPSLEKPHLCCRPTLSVKNLCEYVARQTPVPVEEVEILAVKGCSGTDFDKSTDETSSLKCDELTTLVIDPSKYELEILQGDESLAGIRSKCISKREHLILAYRRKGAL 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01712 512 SMART ring_2 133 172 IPR001841 -
Adu08g01712 512 PANTHER OS11G0578200 PROTEIN 1 509 IPR044592 -
Adu08g01712 512 MobiDBLite consensus disorder prediction 9 23 - -
Adu08g01712 512 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 196 IPR013083 -
Adu08g01712 512 SUPERFAMILY RING/U-box 115 187 - -
Adu08g01712 512 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 1 509 - -
Adu08g01712 512 Pfam Zinc finger, C3HC4 type (RING finger) 132 172 - -
Adu08g01712 512 MobiDBLite consensus disorder prediction 36 55 - -
Adu08g01712 512 MobiDBLite consensus disorder prediction 1 114 - -
Adu08g01712 512 MobiDBLite consensus disorder prediction 231 373 - -
Adu08g01712 512 MobiDBLite consensus disorder prediction 324 338 - -
Adu08g01712 512 ProSitePatterns Zinc finger RING-type signature. 149 158 IPR017907 -
Adu08g01712 512 CDD RING-HC_RING1_like 133 173 - -
Adu08g01712 512 Coils Coil 199 230 - -
Adu08g01712 512 Coils Coil 48 84 - -
Adu08g01712 512 MobiDBLite consensus disorder prediction 56 106 - -
Adu08g01712 512 ProSiteProfiles Zinc finger RING-type profile. 133 173 IPR001841 -
Adu08g01712 512 MobiDBLite consensus disorder prediction 246 268 - -
Adu08g01712 512 MobiDBLite consensus disorder prediction 358 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01712 Adu-Chr8 28322811 28327935 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g01712 126 196 C3H Transcription Factor Family AT3G23060 35.135 4.24e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01712 K10695 - gmx:100776547 555.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01712 08 28322811 28327935 Adu08g01712 08 28322811 28327935 ECH