Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01620 ATGGGAAGAGTACCTTGTTGTGACAAGAATAATGGACTCAAGAAAGGTCCATGGACACCAGAGGAAGATCTCAAGCTTGTCCACTACATCCAGAAACATGGACCTGGAAACTGGAGATCCCTCCCCAAGAATGCCGGTCTGCAAAGATGTGGCAAGAGTTGCCGCCTTAGATGGACAAATTACCTAAGACCTGATATCAAGAGAGGAAGATTCTCCTTTGAAGAAGAAGAAACCATCATTCAGCTTCACAGCTTCATGGGGAACAAGTGGTCCGCTATAGCTGCGCGATTGCCAGGAAGAACGGACAATGAGATAAAGAACTACTGGAACACACACATAAGGAAAAGGCTGCTAAGAATGGGGATTGATCCGGTTACTCATGCGCCGCGACTTGATCTACTGGACATGTCCTCTGTATTAAGATCAGCTTTAGGGAACCCCTCATCAATTCTGAATCTGCAAGGCTTGTTGGTCAACCCTGAATTGCTGAAGCTTGTAGCCACTGCATCCCTATTATCTCATCAGACACAGAATCTACCACAACTGATCAATGCTGGGGCGAATTCCGATTCTCAACAACTACTGAATCATCAGTTTCAGATACCAAATCAAACCACCAATGTGATTGACTTGGTGAGTAATAATTCATTTGCTACTACTCCTTCTTCATATCTTGGGGAGAATTTGAATGTGTCTCAGCAAAACCAAGTTGATTTGTTAGAGAATGAATTGTTACAGTACATAAACAATGGTAGTAGTGATCAAAACATGGGGTATGAATCGGTTATGTCAACGCCTCTTTCGACCCCAACAACAACGCCTTTGACTTCATCATCAACTTATGTGAATAGCAGCAACATAGAACAGGAAGAGAGGGACACCTATTGCAGTGAGGTTTTCAAATTAGAGATTCCAGAGAGTCTTGATATTAATGACTTCTTGTAA 945 0.4275 MGRVPCCDKNNGLKKGPWTPEEDLKLVHYIQKHGPGNWRSLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSFMGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHAPRLDLLDMSSVLRSALGNPSSILNLQGLLVNPELLKLVATASLLSHQTQNLPQLINAGANSDSQQLLNHQFQIPNQTTNVIDLVSNNSFATTPSSYLGENLNVSQQNQVDLLENELLQYINNGSSDQNMGYESVMSTPLSTPTTTPLTSSSTYVNSSNIEQEERDTYCSEVFKLEIPESLDINDFL 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01620 314 Gene3D - 70 117 - -
Adu08g01620 314 Coils Coil 230 250 - -
Adu08g01620 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Adu08g01620 314 PANTHER TRANSCRIPTION FACTOR MYB41 1 309 - -
Adu08g01620 314 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Adu08g01620 314 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Adu08g01620 314 Gene3D - 14 67 - -
Adu08g01620 314 CDD SANT 70 113 IPR001005 -
Adu08g01620 314 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 309 - -
Adu08g01620 314 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Adu08g01620 314 SMART sant 14 64 IPR001005 -
Adu08g01620 314 SMART sant 67 115 IPR001005 -
Adu08g01620 314 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Adu08g01620 314 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Adu08g01620 314 CDD SANT 17 62 IPR001005 -
Adu08g01620 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01620 Adu-Chr8 26858415 26859528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g01620 1 314 MYB Transcription Factor Family AT4G21440 49.185 5.50e-104 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu08g01620 Myb_DNA-binding 7.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01620 K09422 - gmx:102668351 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01620 08 26858415 26859528 Adu03g01338 03 19664613 19666593 PCT