Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01540 ATGGAGTGGATTAGAGGCCAAATCATAGGCCAAGGCTCCTCAGCCACCGTATGCCTAGCTGGCACCACCACCTCTGCCGCCGTCTGTGCCGTCAAGTCAGCAGAGCTCTCACAATCACAACACCTCCAAAGAGAACAAAAAATATTGTCCTCACTCTCTTCACCACACATAGTAACCTACAAAGGCTTTGATATCACAAAAGAGAAAAGCAAGCTCATGTTCAACCTCTTCATGGAGTATATGCCCCATGGAACACTCTCTAGCCACGGTGGCCGCCTCCTGGAGCCAGCGATCGCACACTACACAAAGCAAGTTTTAAAGGGGCTAGAATACTTGCACTCAAGAGAGTTGGTGCATTGTGACATAAAGGGTAGTAACATCCTTGTTGGTGAAGGTAACTGTGTCAAAATTGCTGACTTCGGATTAGCAAAGAGCCTAAATGAGTCAGCCGGGGTGCCACTGGCTGGCACCCCGGCTTTCATGTCGCCGGAGGCGGCTCGGGGGGAGGAGCAGGGGTACCCTTGTGATGTTTGGGGAATTGGATGCACTGTGATTGAGATGGCCACTGGTAGTTCACCATGGCCTAAAGTTAAGGACCCTGTTTCAATGCTGTACCATGTTGGATATTCCGGTGAGGTTCCTGAGATTCCGGGGTTTCTTTCTGAAGAAGCAAAGGATTTCTTGGAGAAGTGTCTTAGGAGGAATCCAAGAGAAAGATGGAGTGCTAGCCAATTGCTGAATCATCCATTTCTTGGGGAATTCAGTTCCAAAGATGGTGATTGTGTTCTTGGGGAATCCAATAGTTCATCATGGTCTCCTACTAGTATTCTTGATCAAGGATTTTGGAATTCTGTGGAGGAATCAGAATGCCCCATTGCTGGGGATTTTGTTCAAACATGTTGTGTGCATTCCGCTTCTGATAGGATCAAGAAGCTGGCTTTGTGTTCTGGTGACCCCAATTGGAATTGGGAAAGTGAGAATTGGATCACAACTAGAGGGAATAACAATAACGAGAGTTCTTGTTCTTGCATTGGTGGATCAATGATAGCTTCAAATTCAGCTATTGATTGTTGGTGTGAGGTGGAGAAAAGGATGTTAGGGTTGTAG 1107 0.4688 MEWIRGQIIGQGSSATVCLAGTTTSAAVCAVKSAELSQSQHLQREQKILSSLSSPHIVTYKGFDITKEKSKLMFNLFMEYMPHGTLSSHGGRLLEPAIAHYTKQVLKGLEYLHSRELVHCDIKGSNILVGEGNCVKIADFGLAKSLNESAGVPLAGTPAFMSPEAARGEEQGYPCDVWGIGCTVIEMATGSSPWPKVKDPVSMLYHVGYSGEVPEIPGFLSEEAKDFLEKCLRRNPRERWSASQLLNHPFLGEFSSKDGDCVLGESNSSSWSPTSILDQGFWNSVEESECPIAGDFVQTCCVHSASDRIKKLALCSGDPNWNWESENWITTRGNNNNESSCSCIGGSMIASNSAIDCWCEVEKRMLGL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01540 368 ProSiteProfiles Protein kinase domain profile. 3 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu08g01540 368 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 345 - -
Adu08g01540 368 CDD STKc_MAPKKK 2 251 - -
Adu08g01540 368 PANTHER MAP KINASE KINASE KINASE 1 345 - -
Adu08g01540 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Adu08g01540 368 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Adu08g01540 368 Gene3D Transferase(Phosphotransferase) domain 1 2 271 - -
Adu08g01540 368 SMART serkin_6 3 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu08g01540 368 Pfam Protein kinase domain 6 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu08g01540 368 SUPERFAMILY Protein kinase-like (PK-like) 3 255 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01540 Adu-Chr8 25630990 25632190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g01540 3 352 MAP Kinase Kinase Kinase AT5G55090 48.656 1.72e-113 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Adu08g01540 Pkinase 3.9e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01540 K20716 - gmx:100786897 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01540 08 25630990 25632190 Adu04g00408 04 4791855 4793552 ECH
Adu08g01540 08 25630990 25632190 Adu08g01540 08 25630990 25632190 ECH
Adu08g01540 08 25630990 25632190 Adu03g01164 03 12852961 12856401 PCT