Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01513 ATGGATAATGAAATTGAGGTTCCTGCACATTTTCTCTGCCCAATATCCCTTCAACTCATGAGAGACCCTGTAATCGTTTGCAGCGGTATCACTTACGACAGAGAGAACATAGAGAAATGGTTATTCTCATGCAAAAACAAAGCATGCCCGGTTACCAAACAGTCCCTAATACAACACACAGATCTTGATCTTATTCTTACTCCAAACCACACCCTACGAAGGCTCATCCAATCATGGTGCACCGTAAACGCCTCTCTCGGAATCGAGCGTATCCCTACTCCAAAACCGTCCATGGACGCATCGTCTCACATCGCCAAACTCATCTCCGAAGCGAAGCGATTCCCGGAGGCTAAGGAGAACTGCCTCGCAACACTCAGATCCATGGCGTTCTTTGAAAGGAACAAGAGCTGTTTCCAGTCTTCAGGTGCAATAGAGTTCTTAGCTACAATCATGATGAACAACAACAATCGCGCAGAAGAAGAAGAACGAGTAGATCCAACTGAAACAGCGATTGAGATCTTGTTTCATCTTGATCTCTCGGAAAATCAGATCAAGAAGCTAATCAACAACGAGTGCCTTCAGTTTCTTGAATCGTTGCTGCAAGCGTTGAAGCGTGGGAGCTGCCAATCAAGAGCGTACGCAACACTTCTTTTGAAATCGGCATTTGCGGTTTCAAATCCGATCCAGTTAATCAGCGCGAAAACCGAAATGCTGTTTGAAATCACGAGAGTGATACGCGATCGTATATCGCAGCAGGCTCATAAGGCGGCATTGAAGCTGGTGGTTGAGCTCTGTCCATGGGGAAGAAACAGAATCAAAGCGGTGGAAGCCGGCGCGGTGTCCGTGCTCGTGGAAGTGCTTCTTGATTCGACGGAAAGAAGAACGTGTGAGCTGGCGTTAATGGCGTTGGATCAGCTTTGCGGTTGCGCGGAAGGGCGCGCGGAGTTGGTGAAGCACGGCGCGGGAATCGCCGTGGTTTCGAAGAAAATATTGAGAGTTTCACGCGCCGCGAGTGACAGAGGAGTTAGGATATTAGCGTCGGTTTGTAGGTTCTGTGGAAGCGGGAGAGTGGTTCAAGAGATGATGCAGGTTGGAGCCGTTAACAAGCTGTGTTTGGTGCTTCAAGTTGATAGCGCTTTGAAGACCAAAGAGAGGGCTAAAGAGATTCTCAAGTTGCATTCTCTGGTTTGGAAGAATTCAACATGTATTCCTCTACCTTTGTTATCATCGTATCCATGA 1239 0.4762 MDNEIEVPAHFLCPISLQLMRDPVIVCSGITYDRENIEKWLFSCKNKACPVTKQSLIQHTDLDLILTPNHTLRRLIQSWCTVNASLGIERIPTPKPSMDASSHIAKLISEAKRFPEAKENCLATLRSMAFFERNKSCFQSSGAIEFLATIMMNNNNRAEEEERVDPTETAIEILFHLDLSENQIKKLINNECLQFLESLLQALKRGSCQSRAYATLLLKSAFAVSNPIQLISAKTEMLFEITRVIRDRISQQAHKAALKLVVELCPWGRNRIKAVEAGAVSVLVEVLLDSTERRTCELALMALDQLCGCAEGRAELVKHGAGIAVVSKKILRVSRAASDRGVRILASVCRFCGSGRVVQEMMQVGAVNKLCLVLQVDSALKTKERAKEILKLHSLVWKNSTCIPLPLLSSYP 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01513 412 Pfam U-box domain 7 82 IPR003613 GO:0004842|GO:0016567
Adu08g01513 412 SMART Ubox_2 10 79 IPR003613 GO:0004842|GO:0016567
Adu08g01513 412 SUPERFAMILY RING/U-box 5 84 - -
Adu08g01513 412 SUPERFAMILY ARM repeat 114 229 IPR016024 -
Adu08g01513 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Adu08g01513 412 CDD RING-Ubox_PUB 11 54 IPR045210 -
Adu08g01513 412 PANTHER OS11G0573500 PROTEIN 6 412 - -
Adu08g01513 412 Gene3D - 96 400 IPR011989 -
Adu08g01513 412 ProSiteProfiles U-box domain profile. 6 86 IPR003613 GO:0004842|GO:0016567
Adu08g01513 412 SUPERFAMILY ARM repeat 196 377 IPR016024 -
Adu08g01513 412 ProSiteProfiles Leucine-rich repeat profile. 173 194 IPR001611 GO:0005515
Adu08g01513 412 PANTHER WDSAM1 PROTEIN 6 412 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01513 Adu-Chr8 25240619 25241857 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g01513 1 412 U-box Gene Family AT2G35930 52.518 3.39e-147 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01513 - - gmx:100778012 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01513 08 25240619 25241857 Adu08g01513 08 25240619 25241857 ECH
Adu08g01513 08 25240619 25241857 Adu03g01109 03 12141861 12143380 PCT