Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01459 ATGGGTGCGAAGAGATTACCATTTCCCATTCTCTTGTGCGCTTCAGAGGGAGAGCATGGAGTGGGGAACAATCATCATCATCATCAGAAGGAAGAAGAAGAAGAAGGTATTGAGGTGAAAGAAGAGAAGGTGGAACAACAACAACAGTTGATGACTGTGGCTTTGCACATTGGATTACCAACAAACAACACAGTAGGAGTTGTTGCTGCTGATGATGATGAGAAAAAGAAGGTTTTGCATGTTAAGGAGGAGGAAGAAAAAGAAAAAGAAGAAGAAGAAGCAGAAGAAGAAGAAGAAGAAAAGTTATTGGAGAGAAGATTATTGGAGAATTGGTGGTTAAAGCAGGAAGAGAATAAGAGGTTTTGGATACCAAGTCCTTCACAAATCCTTGTTGGACCTATGCAGTTTGCTTGCTCTATTTGCAACAAAACTTTCAACAGATATAACAATATGCAGATGCATATGTGGGGGCATGGTTCGGAATTCAGGAAAGGGCCAGACTCACTGAGAGGAACACAACCTGCGGCAATGCTAAGGCTACCATGTTATTGTTGTGCACAAGGTTGCAAGAACAACATCAACCATCCAAGGGCAAAGCCATTGAAGGATTTCAGAACTCTGCAAACACACTACAAGAGAAAGCATGGCACCAAGCCCTTTATGTGTAGAAAGTGTGGCAAAACCTTTGCTGTTAAAGGTGATTGGAGGACTCATGAGAAGAACTGTGGTAAGCTTTGGTATTGCACTTGTGGTTCCGATTTCAAGCATAAGAGGTCCCTTAAGGATCACATTAGATCCTTTGGTAAGGGTCACTCTCCTCATCCTTCTCTTGAAGGTTTTGAGGATGAGAAGGAATGCATTACCACTGGCTCTGATGAAGATGAACTTAAGTAG 894 0.4217 MGAKRLPFPILLCASEGEHGVGNNHHHHQKEEEEEGIEVKEEKVEQQQQLMTVALHIGLPTNNTVGVVAADDDEKKKVLHVKEEEEKEKEEEEAEEEEEEKLLERRLLENWWLKQEENKRFWIPSPSQILVGPMQFACSICNKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPSLEGFEDEKECITTGSDEDELK 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01459 297 SUPERFAMILY beta-beta-alpha zinc fingers 115 159 IPR036236 -
Adu08g01459 297 SMART c2h2final6 136 158 IPR013087 -
Adu08g01459 297 SMART c2h2final6 220 240 IPR013087 -
Adu08g01459 297 SMART c2h2final6 183 215 IPR013087 -
Adu08g01459 297 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 28 294 - -
Adu08g01459 297 Coils Coil 75 109 - -
Adu08g01459 297 SUPERFAMILY beta-beta-alpha zinc fingers 206 240 IPR036236 -
Adu08g01459 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 163 IPR013087 -
Adu08g01459 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 220 240 IPR013087 -
Adu08g01459 297 MobiDBLite consensus disorder prediction 268 297 - -
Adu08g01459 297 PANTHER ZINC FINGER PROTEIN WIP2 28 294 IPR043584 GO:0003700|GO:0010468
Adu08g01459 297 Gene3D Classic Zinc Finger 216 276 - -
Adu08g01459 297 MobiDBLite consensus disorder prediction 79 98 - -
Adu08g01459 297 ProSitePatterns Zinc finger C2H2 type domain signature. 138 158 IPR013087 -
Adu08g01459 297 Pfam C2H2-type zinc finger 136 155 - -
Adu08g01459 297 Coils Coil 30 50 - -
Adu08g01459 297 Gene3D Classic Zinc Finger 135 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01459 Adu-Chr8 24595878 24601119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g01459 119 289 C2H2 Transcription Factor Family AT1G08290 87.356 2.64e-116 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu08g01459 zf-C2H2_6 9.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01459 - - ahf:112706908 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01459 08 24595878 24601119 Adu08g01459 08 24595878 24601119 ECH