Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01440 ATGGAGTTTGAGAATAACGAAGAATCACTTTATTACTATTCTTCTTCTTCATCACTATCTTCTTCCACTTCATCTCAAACCCAACTCTCGGCCATCAGCCCACCGCCATCGTCGTCGCCATCACGCAGTCAGAAGAAGAGATCAGGGAGGAAGAAGTTCCGAGAGATGCGACACCCGGTGTACAGGGGTGTCCGGCGGAGGAACGGCAACAAGTGGGTGTGCGAAGTGAGAGAACCAATCAAGAAATCAAGAATATGGCTCGGAACTTACCCTACCCCTGAAATGGCCGCTAGGGCACACGACGCCGCAGTTCTGGCACTTAGAGGCACCTCAGCCACCTTCAATTTCCCTCTCTCCGTCCCCCTTCTTCCCCTTGCTGAGTCATCTTCACCTCAACATATTCGAGAAGCTGCTTCCAAAGCCGCACAACAAACTAGCAGTAATAATGATATTACTAACCCTCCTGTTTCTTCTTCGAATATGAATCTTTCTGTTGGTGTTGATGGTGGTGGTGGAGTAGTGGGGTCGACGTTCTTTGATGAGGAGGCAATGTTTAACATGCCTGCATTGCTTGATAGCATGGCGGAGGGTTTGCTTATAACACCACCGTCCATGAAGCGAGGAGCTTTTCATGATGATGATGAATTTCAAACTGACCTCACTCTCTGGAATTTCGACTAA 681 0.4831 MEFENNEESLYYYSSSSSLSSSTSSQTQLSAISPPPSSSPSRSQKKRSGRKKFREMRHPVYRGVRRRNGNKWVCEVREPIKKSRIWLGTYPTPEMAARAHDAAVLALRGTSATFNFPLSVPLLPLAESSSPQHIREAASKAAQQTSSNNDITNPPVSSSNMNLSVGVDGGGGVVGSTFFDEEAMFNMPALLDSMAEGLLITPPSMKRGAFHDDDEFQTDLTLWNFD 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01440 226 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 1 224 - -
Adu08g01440 226 MobiDBLite consensus disorder prediction 16 58 - -
Adu08g01440 226 Gene3D AP2/ERF domain 60 119 IPR036955 GO:0003700|GO:0006355
Adu08g01440 226 SMART rav1_2 60 123 IPR001471 GO:0003700|GO:0006355
Adu08g01440 226 MobiDBLite consensus disorder prediction 16 43 - -
Adu08g01440 226 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Adu08g01440 226 PRINTS Ethylene responsive element binding protein signature 83 99 IPR001471 GO:0003700|GO:0006355
Adu08g01440 226 SUPERFAMILY DNA-binding domain 60 119 IPR016177 GO:0003677
Adu08g01440 226 ProSiteProfiles AP2/ERF domain profile. 60 117 IPR001471 GO:0003700|GO:0006355
Adu08g01440 226 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 224 IPR045277 GO:0003700
Adu08g01440 226 CDD AP2 61 119 IPR001471 GO:0003700|GO:0006355
Adu08g01440 226 Pfam AP2 domain 59 109 IPR001471 GO:0003700|GO:0006355
Adu08g01440 226 MobiDBLite consensus disorder prediction 44 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01440 Adu-Chr8 24192770 24193450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g01440 18 226 AP2-EREBP Transcription Factor Family AT5G51990 46.512 1.76e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Adu08g01440 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01440 - - aip:107610400 355.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01440 08 24192770 24193450 Adu08g01440 08 24192770 24193450 ECH