Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01399 ATGGCTCGTGGAAGAATTCAGTTGAAGAGAATAGAGAACCCGGTTCACAGGCAAGTTACCTTCTGCAAGCGCCGAGCTGGGCTTCTCAAGAAGGCTAAGGAGCTCTCTGTCCTTTGCGACGCTGAAATTGGCCTTGTCATTTTCTCCGCTCATGGCAAGCTCTATGAACTCGCCACTAAAGGAACCATGCAAGGAGTGATAGAGAGGTACATGAAGTTTACTGGGGCGGCTCAGCCTGAAGAACCACCAACTGAACCGCATCATCATCCTCTTCAAGATTTTGGGACTTCAAGAGTTGCTGCCACTTCAAGCACCAGAAATTTGGAGCTGTTGAAAAGCTTAGCTGATTTTGCTATTGACTACACAAAAGATTTGATTCTGCAAATAATTGGTGAAATAACTATGTCTGCTGATGCAACATATAAAGCTATGGAGTTTGTTGGCACAACTGTTGAAAGTTTAAATATGGAGTAA 474 0.4409 MARGRIQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLVIFSAHGKLYELATKGTMQGVIERYMKFTGAAQPEEPPTEPHHHPLQDFGTSRVAATSSTRNLELLKSLADFAIDYTKDLILQIIGEITMSADATYKAMEFVGTTVESLNME 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01399 157 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Adu08g01399 157 Gene3D Aconitase, domain 3 119 157 IPR015931 -
Adu08g01399 157 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Adu08g01399 157 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Adu08g01399 157 Gene3D - 15 78 IPR036879 GO:0003677|GO:0046983
Adu08g01399 157 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Adu08g01399 157 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 1 81 - -
Adu08g01399 157 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 81 - -
Adu08g01399 157 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Adu08g01399 157 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Adu08g01399 157 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Adu08g01399 157 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Adu08g01399 157 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01399 Adu-Chr8 23669891 23675142 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g01399 1 92 MADS-box Gene Family AT1G71692 72.826 9.66e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Adu08g01399 SRF-TF 1.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01399 - - ahf:112789464 180.644