Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01396 ATGGCGAAGGGTACGGATTCCAACGAGTTCATGATGCTTTCTAGGGTACGGACGGGTCTCAAGAGGGAATTTGCATTCGCCATGAAGGCCCAATCGGAGATCGGTGGCGGTTCCTTGGGCCGCACCCGTGCCAGCAAGAACCAGAATGTGCCTCCGGCTCAGCCCAGTCCCGCCAGAAAGCGCCAAAGGAAGTCATGTTCCGTGGAGGAAGAGGCGCCGGCGACGAAGAATGAAGTTCAAGAGGAGGTTGATGGGTACACGGCAGATGTGGCGGGTGTGGCGACAGCGAAGATTGATTCGGAGGAGGCTGGCGACGCCGTGAGCGAGGAGGAAGCGAAGAGCGACGTGGTGGATATCAACAGCGACGACGAGCCGAAGAATAATCAGGTTGGGGAATCATTGTTGGAGGAGAAGAAGATAGAGGAGGGAGAGGTTGACGAACCAAAGGGTGATATGGTGCTGGAGACTGTGATCAATGAGGAACCCATCAATGAAGAAGAGCCTCGTGTGGTTGTGGATGAAATTGAGAATAAAGAGGAGCAAGTTTCTCCTGAGGATAAAAGTGCACCTTTGGAAAAACGTGCTTCTGGGGAACACGGTGCAGTTGGGATAACAACACCACTTTTGGTTTGCAGTGACGATGATAAGGGGAAGAGAGTTGTAGCTGTGGAGAAGCCTATGAGGAGGTTTACTAGGTCGGTATTGAAGCAAAAAACTGAGAATACCAATATGGTGAATGATGGGGAAGGTGATGCTATTGTTGTTATAGGTGTTGGAGCTGCTGATGATAATGTTCAGAATGAAACTGAGGTTGTGACTGAAACTGATGCTTCACCACAGTTCACAACTCCAACTCCAGCAAAGGGATCAAGGAGGGGCATGAAGAGGTTCCCTACCAAGCTGAAGGACCTTCTCGCCACCGGGATTCTTGAGGGACTGCAAGTGAAGTATGTCAGGGGATTGAAGGCACGGAGGCCTGGAGAAGCAGGGCTTCAAGGAGTCATTCGTGACTCGGGGGTTTTGTGCTATTGTCCGGATTGTAAAGGGAACAAGGTTGTCACACCCACTGTGTTTGAGCTGCATGCTGGTAGTGCGAACAAACGACCTCCTGAGTATATGTACCTTGAGAATGGGAATACTCTCCGTGACATCATGAATGCATGCTGGAATTTTCCTTTGGACACCATGGAAGAAGCTGTCCAAAAGGTCCTTGGTGGTTTCACTTTGAAGAAGTCTAACATCTGTTTTAATTGCAGAGGTGGCAATGGTTCATCAAGACTACTACTATGTGATTCGTGCATGGAGTTGAAAGACACTCAACCTAGCCATCGTCAAACAAAAAGTGTTGATCAAAATACCGTGACTAGCACTAGAAGTGTTGCCCAAACTCCTATGACTAGCACTAAAAGTGTTGGCCAAACTCCTCTGACTAGCACTAAAAGTGTTGCCCAAACTCCTGTGACTAGCACTAAAATTGTTGCCCAAACTCCTGTGACTGGCACACATTTTAACTATTCCAGATCACCAGAACCACAATCAGAACCAGAGCCAGTTGCAGTTCCAAAGTCCTTAAACAATGGAATGAAGCATAGCACATCTCATGGCAGGAGCCAGGGAAGAATTACTAGAAAGTATGAAGACGTGCTGGCAGATGGAACTGAACTAGCGTACTATGCTCATGGAGAGAAAAAGCTGGTAGGTTACAAGAAGGGATATGGAATTTTTTGTACCTGCTGCAAATCTGAGGTCAGTGCCTCTCAGTTTGAAGCCCATGCTGGCTTGGCATCTCGACGCAAGCCTTACTTGCACATATACACACCTGATGGAGTTTCACTCCATGATTTGTCCATCTCTTTATCAAAAGATCGGAGGTTTGCTATCAGTGAAAATGATGACCTCTGCAGCATTTGTGAAGATGGAGGGGATCTTTTGTGCTGTGATGGATGTCCAAGAGCTTTTCACATAGATTGTGTTCCTCTTCCATGCATTCCAACTGGTACTTGGTATTGTAAATATTGTCAGAATCTTTATGGGGAGCATAATGTGAATGCGCAAGCAAAAGACCGAAGATGTGTACGTGTTGTCAAAACTAACAAGGTTGACCATGGTGGATGTGCCTTATGCAGACTCTACTATTTCAGTAAAAGTTTTGGTCCTCGGACAGTAATCATTTGTGATCAGTGTGAAAAAGAATATCACGTTGGGTGCTTGAAGGAACATAACATACAAAACCTTGAGGAATTACCTGAAGGGAATTGGTTTTGTGGTACAAGTTGTGGTCAAATTCATTCTGCTCTTGTGAATTTGGTGGCTAGTGGAGAGAATAGCCTCCCAGATTCCCTTTTAAGTTTGATTAAAAGGAAACATGAAGAGAAAGGTTTAGATGCTGTGGATGGTCTCGATATTAAATGGAGGCTTCTGAACTGGAAGCGTGCTGCTTCTGTTGACACTAGAAAATTGCTTTCAAAGGCTGTTGCCATCTTCCATGAGAGGTTTGATCCTATAGTCGATTCTAGTTCTGGCCGTGATTTTATTCCAACCATGCTATTTGGAAGGAACATCCGGGGTCAAGATTTTGGTGGAATGTACTGTGCGGTGCTTACTGTCAACCAAGTTGTTGTCTCTGCTGGCATATTTCGTGTCTTCGGGCTAGAAGTAGCAGAGCTTCCACTAGTGGCAACAGTAGCAGATTTCCAAGGAAAGGGTTACTTTCAGTGCCTATTTTCTTGCATGGAGAGGCTGCTTGCATCTCTGAATGTGAAACACCTTGTTTTGCCCGCTGCTGAAGAAGCCGAATCAATATGGACAAGTAAATTTGGGTTTACAAAACTGGAACAAGAGGAGATAAACAACTATAAGAAATTTTATCGCATGATGATCTTTCAAGGGACTTCATTACTACATAAGCCGGTTCCTATGCCTGAACAGAACTAA 2934 0.4574 MAKGTDSNEFMMLSRVRTGLKREFAFAMKAQSEIGGGSLGRTRASKNQNVPPAQPSPARKRQRKSCSVEEEAPATKNEVQEEVDGYTADVAGVATAKIDSEEAGDAVSEEEAKSDVVDINSDDEPKNNQVGESLLEEKKIEEGEVDEPKGDMVLETVINEEPINEEEPRVVVDEIENKEEQVSPEDKSAPLEKRASGEHGAVGITTPLLVCSDDDKGKRVVAVEKPMRRFTRSVLKQKTENTNMVNDGEGDAIVVIGVGAADDNVQNETEVVTETDASPQFTTPTPAKGSRRGMKRFPTKLKDLLATGILEGLQVKYVRGLKARRPGEAGLQGVIRDSGVLCYCPDCKGNKVVTPTVFELHAGSANKRPPEYMYLENGNTLRDIMNACWNFPLDTMEEAVQKVLGGFTLKKSNICFNCRGGNGSSRLLLCDSCMELKDTQPSHRQTKSVDQNTVTSTRSVAQTPMTSTKSVGQTPLTSTKSVAQTPVTSTKIVAQTPVTGTHFNYSRSPEPQSEPEPVAVPKSLNNGMKHSTSHGRSQGRITRKYEDVLADGTELAYYAHGEKKLVGYKKGYGIFCTCCKSEVSASQFEAHAGLASRRKPYLHIYTPDGVSLHDLSISLSKDRRFAISENDDLCSICEDGGDLLCCDGCPRAFHIDCVPLPCIPTGTWYCKYCQNLYGEHNVNAQAKDRRCVRVVKTNKVDHGGCALCRLYYFSKSFGPRTVIICDQCEKEYHVGCLKEHNIQNLEELPEGNWFCGTSCGQIHSALVNLVASGENSLPDSLLSLIKRKHEEKGLDAVDGLDIKWRLLNWKRAASVDTRKLLSKAVAIFHERFDPIVDSSSGRDFIPTMLFGRNIRGQDFGGMYCAVLTVNQVVVSAGIFRVFGLEVAELPLVATVADFQGKGYFQCLFSCMERLLASLNVKHLVLPAAEEAESIWTSKFGFTKLEQEEINNYKKFYRMMIFQGTSLLHKPVPMPEQN 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01396 977 Pfam PHD-finger 634 675 IPR019787 -
Adu08g01396 977 MobiDBLite consensus disorder prediction 41 55 - -
Adu08g01396 977 MobiDBLite consensus disorder prediction 177 194 - -
Adu08g01396 977 CDD PHD1_AIRE 633 673 - -
Adu08g01396 977 ProSiteProfiles Zinc finger PHD-type profile. 631 676 IPR019787 -
Adu08g01396 977 PANTHER AUTOIMMUNE REGULATOR 1 970 - -
Adu08g01396 977 ProSitePatterns Zinc finger PHD-type signature. 634 673 IPR019786 -
Adu08g01396 977 MobiDBLite consensus disorder prediction 445 483 - -
Adu08g01396 977 MobiDBLite consensus disorder prediction 177 197 - -
Adu08g01396 977 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 857 950 IPR016181 -
Adu08g01396 977 MobiDBLite consensus disorder prediction 62 78 - -
Adu08g01396 977 MobiDBLite consensus disorder prediction 274 294 - -
Adu08g01396 977 SUPERFAMILY FYVE/PHD zinc finger 702 756 IPR011011 -
Adu08g01396 977 MobiDBLite consensus disorder prediction 502 539 - -
Adu08g01396 977 SUPERFAMILY FYVE/PHD zinc finger 627 676 IPR011011 -
Adu08g01396 977 SMART PHD_3 704 759 IPR001965 -
Adu08g01396 977 SMART PHD_3 633 674 IPR001965 -
Adu08g01396 977 MobiDBLite consensus disorder prediction 440 483 - -
Adu08g01396 977 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 699 762 IPR013083 -
Adu08g01396 977 Pfam Tify domain binding domain 333 388 IPR032308 -
Adu08g01396 977 Pfam Tify domain binding domain 567 615 IPR032308 -
Adu08g01396 977 PANTHER AUTOIMMUNE REGULATOR 1 970 - -
Adu08g01396 977 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 627 695 IPR013083 -
Adu08g01396 977 MobiDBLite consensus disorder prediction 32 141 - -
Adu08g01396 977 MobiDBLite consensus disorder prediction 107 122 - -
Adu08g01396 977 Gene3D - 801 969 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01396 Adu-Chr8 23627368 23633541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g01396 298 971 PHD Transcription Factor Family AT2G36720 44.414 0.0 595
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Adu08g01396 TDBD 2.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01396 - - gmx:100803825 1093.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01396 08 23627368 23633541 Adu08g01396 08 23627368 23633541 ECH
Adu08g01396 08 23627368 23633541 Adu03g00075 03 700530 706294 PCT