Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01394 ATGATTTCAACAAGTATCGAACAAAATCAAGGGTTGATGATGCAGATGTTCCCTACTCCTCCTCCTGGGAGCGAGGATTTGGTGTCACAACAATCTATGGAAATAGTTAATAACTCTTCTGTTGGTTCTTCTTCTTCATCTACAGCTGCTGCTGCTGCTTCTTCTTCTTCACACTCAAGCTCCCTTCTCTTCAATCTCTCTGTTCTCAAGGACAAGCTTAATCAGGTTCAGACCCTGGTTGGTGTTATTCTCTCCCCAGATCAGAACCTTCAGGACTCAACTACCTCCATGGCTGTTTCAAGCATGAACTCCACAATCCAAGAAATCATACCTCCTCCTCCTCCTCCTCCTCCTCCAGGTACCATTGCTACTACTGTTGCTTTCGCCAACAACCACCATGAATTGCACCAACAACAACATCAAAGGTTATTGATCAATAATAACAATAATAATCTTAGAGGTTTCTTTTCTAGCACTACTGATTCTGAGGCACTGGATAATTGGCTTGGTGAAAGCTATAACAATACTGGTGGTGTTGATTGTAAGGTTAATAATAACGATGATGATGATCCAAGTGTTGAAATTAGTGATAGCAAAGAAGGAGCAAAGAAGTTGGATATAATTGAATTGGATGCTGCGGATTTGTTGGCGAAATACACACATTACTGCAGTGTTTGTGGGAAAGGGTTCAAGCGGGATGCGAATTTGAGGATGCACATGAGAGCTCACGGTGATGAATACAAAACGAGTGCCGCATTGAGTAACCCATTGAAGCAGAACAATAACGGCGAGAATGGTGATTGCTTGCCGAAGAAGTACTCGTGCCCTCAAGAAGGGTGTAGGTGGAACCAGAAGCACGCAAAGTTTCAGCCATTGAAGTCAATGATATGTGCAAAGAATCACTACAAGAGAAGCCATTGTCCGAAGATGTACGTGTGCAAGAGGTGTAACCAGAAGCAGTTCTCGGTGCTGTCTGATCTGAGAACACATGAGAAGCACTGTGGGGATCTCAAATGGCAGTGTTCTTGTGGCACCACTTTCTCCAGGAAAGACAAGCTTATGGGACATGTTGCTTTGTTTGTTGGCCACCGAGCCCTTTCCATTGCCTTCCACCAATACAATAGTGCAGCTTAA 1134 0.4374 MISTSIEQNQGLMMQMFPTPPPGSEDLVSQQSMEIVNNSSVGSSSSSTAAAAASSSSHSSSLLFNLSVLKDKLNQVQTLVGVILSPDQNLQDSTTSMAVSSMNSTIQEIIPPPPPPPPPGTIATTVAFANNHHELHQQQHQRLLINNNNNNLRGFFSSTTDSEALDNWLGESYNNTGGVDCKVNNNDDDDPSVEISDSKEGAKKLDIIELDAADLLAKYTHYCSVCGKGFKRDANLRMHMRAHGDEYKTSAALSNPLKQNNNGENGDCLPKKYSCPQEGCRWNQKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHRALSIAFHQYNSAA 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01394 377 ProSitePatterns Zinc finger C2H2 type domain signature. 223 243 IPR013087 -
Adu08g01394 377 ProSiteProfiles Zinc finger C2H2 type domain profile. 221 248 IPR013087 -
Adu08g01394 377 MobiDBLite consensus disorder prediction 1 15 - -
Adu08g01394 377 SUPERFAMILY beta-beta-alpha zinc fingers 219 246 IPR036236 -
Adu08g01394 377 Gene3D Classic Zinc Finger 221 267 - -
Adu08g01394 377 SMART c2h2final6 311 333 IPR013087 -
Adu08g01394 377 SMART c2h2final6 221 243 IPR013087 -
Adu08g01394 377 SMART c2h2final6 273 306 IPR013087 -
Adu08g01394 377 PANTHER OS08G0562300 PROTEIN 29 371 - -
Adu08g01394 377 MobiDBLite consensus disorder prediction 1 29 - -
Adu08g01394 377 Gene3D Classic Zinc Finger 309 359 - -
Adu08g01394 377 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 29 371 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01394 Adu-Chr8 23614962 23616961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g01394 46 363 C2H2 Transcription Factor Family AT5G22890 49.560 1.73e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu08g01394 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01394 - - gmx:100802769 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01394 08 23614962 23616961 Adu08g01394 08 23614962 23616961 ECH
Adu08g01394 08 23614962 23616961 Adu03g00080 03 716399 717487 PCT