Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Adu08g01394 | ATGATTTCAACAAGTATCGAACAAAATCAAGGGTTGATGATGCAGATGTTCCCTACTCCTCCTCCTGGGAGCGAGGATTTGGTGTCACAACAATCTATGGAAATAGTTAATAACTCTTCTGTTGGTTCTTCTTCTTCATCTACAGCTGCTGCTGCTGCTTCTTCTTCTTCACACTCAAGCTCCCTTCTCTTCAATCTCTCTGTTCTCAAGGACAAGCTTAATCAGGTTCAGACCCTGGTTGGTGTTATTCTCTCCCCAGATCAGAACCTTCAGGACTCAACTACCTCCATGGCTGTTTCAAGCATGAACTCCACAATCCAAGAAATCATACCTCCTCCTCCTCCTCCTCCTCCTCCAGGTACCATTGCTACTACTGTTGCTTTCGCCAACAACCACCATGAATTGCACCAACAACAACATCAAAGGTTATTGATCAATAATAACAATAATAATCTTAGAGGTTTCTTTTCTAGCACTACTGATTCTGAGGCACTGGATAATTGGCTTGGTGAAAGCTATAACAATACTGGTGGTGTTGATTGTAAGGTTAATAATAACGATGATGATGATCCAAGTGTTGAAATTAGTGATAGCAAAGAAGGAGCAAAGAAGTTGGATATAATTGAATTGGATGCTGCGGATTTGTTGGCGAAATACACACATTACTGCAGTGTTTGTGGGAAAGGGTTCAAGCGGGATGCGAATTTGAGGATGCACATGAGAGCTCACGGTGATGAATACAAAACGAGTGCCGCATTGAGTAACCCATTGAAGCAGAACAATAACGGCGAGAATGGTGATTGCTTGCCGAAGAAGTACTCGTGCCCTCAAGAAGGGTGTAGGTGGAACCAGAAGCACGCAAAGTTTCAGCCATTGAAGTCAATGATATGTGCAAAGAATCACTACAAGAGAAGCCATTGTCCGAAGATGTACGTGTGCAAGAGGTGTAACCAGAAGCAGTTCTCGGTGCTGTCTGATCTGAGAACACATGAGAAGCACTGTGGGGATCTCAAATGGCAGTGTTCTTGTGGCACCACTTTCTCCAGGAAAGACAAGCTTATGGGACATGTTGCTTTGTTTGTTGGCCACCGAGCCCTTTCCATTGCCTTCCACCAATACAATAGTGCAGCTTAA | 1134 | 0.4374 | MISTSIEQNQGLMMQMFPTPPPGSEDLVSQQSMEIVNNSSVGSSSSSTAAAAASSSSHSSSLLFNLSVLKDKLNQVQTLVGVILSPDQNLQDSTTSMAVSSMNSTIQEIIPPPPPPPPPGTIATTVAFANNHHELHQQQHQRLLINNNNNNLRGFFSSTTDSEALDNWLGESYNNTGGVDCKVNNNDDDDPSVEISDSKEGAKKLDIIELDAADLLAKYTHYCSVCGKGFKRDANLRMHMRAHGDEYKTSAALSNPLKQNNNGENGDCLPKKYSCPQEGCRWNQKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHRALSIAFHQYNSAA | 377 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Adu08g01394 | 377 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 223 | 243 | IPR013087 | - | |
Adu08g01394 | 377 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 221 | 248 | IPR013087 | - | |
Adu08g01394 | 377 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Adu08g01394 | 377 | SUPERFAMILY | beta-beta-alpha zinc fingers | 219 | 246 | IPR036236 | - | |
Adu08g01394 | 377 | Gene3D | Classic Zinc Finger | 221 | 267 | - | - | |
Adu08g01394 | 377 | SMART | c2h2final6 | 311 | 333 | IPR013087 | - | |
Adu08g01394 | 377 | SMART | c2h2final6 | 221 | 243 | IPR013087 | - | |
Adu08g01394 | 377 | SMART | c2h2final6 | 273 | 306 | IPR013087 | - | |
Adu08g01394 | 377 | PANTHER | OS08G0562300 PROTEIN | 29 | 371 | - | - | |
Adu08g01394 | 377 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Adu08g01394 | 377 | Gene3D | Classic Zinc Finger | 309 | 359 | - | - | |
Adu08g01394 | 377 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 29 | 371 | IPR044300 | GO:0010044|GO:0010447 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Adu08g01394 | Adu-Chr8 | 23614962 | 23616961 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Adu08g01394 | 46 | 363 | C2H2 Transcription Factor Family | AT5G22890 | 49.560 | 1.73e-102 | 306 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Adu08g01394 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Adu08g01394 | - | - | gmx:100802769 | 372.089 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Adu08g01394 | 08 | 23614962 | 23616961 | Adu08g01394 | 08 | 23614962 | 23616961 | ECH | |
Adu08g01394 | 08 | 23614962 | 23616961 | Adu03g00080 | 03 | 716399 | 717487 | PCT |