Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01392 ATGGAGATGGAATTAGGCATAGGCACGGAAGAGTTTCTTAACGATGCTTCCCACATCGCCAAGGGAAAGCGCACCAAGAGGCACAAACCCTTCTCCCCTTGCGACGTCGCCGCCATCACTTCCAGCTCCTCAAGCGCCAACGACTCTGCTTCCTTCTCTTCCACCACCACCTTTCAAGACGAAGAACAAGACATGGCTAACTGCTTGATTCTCCTTGCTCAAGGAAAAACAGGCGGAGAAGAAACCGATGATGAAGAAGATAACAAGATGAGAGAGAAGAGCAGAAGAATATCGGAGGTCACGACAACCGCAACTACAAAAATCGGTTTTTACATCTATGAATGCAAAACGTGCAACCGAACATTCCCTTCTTTTCAAGCTCTTGGAGGCCATAGGGCCGGCCATAAAAAGCCAAAGGTCACATCAGATGACAAAAAGAAACCGCAACCACAACCACAACCACAACCAAATACTTTGGCGCTAATCACAAATTGCGACTTTGAAGAAACAAAGCAAGTACGTGTGATGACAACAAGCCCTCCAATTTCCCTTCAATTGGGATATGGTGGTGCTACCAACAACAATAACGGCAAGCCCAAGATTCATGAGTGTTCAATTTGCGGTTCAGAATTCACATCTGGACAAGCCCTTGGTGGTCACATGAGGAGGCATAGGACAGCTGTCATCACTACTACTAGTCCTCAGCCAACTTGTGACGTGCCTGCCAGGCTGGAGGTCGTTAAGCCGCCGCGGAATCTTCTGGAATTGGATCTTAACCTTCCGGCGCCGGCGGACGACGACCACCACCACCGGGATTCCCAGTTTCAGTTCTCGTCCACACAGAAAACCATGATGCTTTCTGCTGCACCGCCTTTGGTGGATTGTCATTATTAA 894 0.4866 MEMELGIGTEEFLNDASHIAKGKRTKRHKPFSPCDVAAITSSSSSANDSASFSSTTTFQDEEQDMANCLILLAQGKTGGEETDDEEDNKMREKSRRISEVTTTATTKIGFYIYECKTCNRTFPSFQALGGHRAGHKKPKVTSDDKKKPQPQPQPQPNTLALITNCDFEETKQVRVMTTSPPISLQLGYGGATNNNNGKPKIHECSICGSEFTSGQALGGHMRRHRTAVITTTSPQPTCDVPARLEVVKPPRNLLELDLNLPAPADDDHHHRDSQFQFSSTQKTMMLSAAPPLVDCHY 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01392 297 Pfam C2H2-type zinc finger 113 138 - -
Adu08g01392 297 Pfam C2H2-type zinc finger 202 226 - -
Adu08g01392 297 MobiDBLite consensus disorder prediction 75 98 - -
Adu08g01392 297 ProSitePatterns Zinc finger C2H2 type domain signature. 115 135 IPR013087 -
Adu08g01392 297 SUPERFAMILY beta-beta-alpha zinc fingers 112 224 IPR036236 -
Adu08g01392 297 MobiDBLite consensus disorder prediction 78 98 - -
Adu08g01392 297 SMART c2h2final6 113 135 IPR013087 -
Adu08g01392 297 SMART c2h2final6 202 224 IPR013087 -
Adu08g01392 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 202 224 IPR013087 -
Adu08g01392 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 140 IPR013087 -
Adu08g01392 297 Gene3D Classic Zinc Finger 111 224 - -
Adu08g01392 297 MobiDBLite consensus disorder prediction 128 158 - -
Adu08g01392 297 ProSitePatterns Zinc finger C2H2 type domain signature. 204 224 IPR013087 -
Adu08g01392 297 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 14 297 - -
Adu08g01392 297 PANTHER ZINC FINGER PROTEIN ZAT5 14 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01392 Adu-Chr8 23565489 23566565 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g01392 5 297 C2H2 Transcription Factor Family AT2G28200 40.125 3.73e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu08g01392 zf-C2H2_6 4.2e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01392 - - aprc:113858527 241.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01392 08 23565489 23566565 Adu08g01392 08 23565489 23566565 ECH
Adu08g01392 08 23565489 23566565 Adu06g01577 06 43525820 43526990 ECH
Adu08g01392 08 23565489 23566565 Adu03g00082 03 728178 729209 ECH
Adu06g01577 06 43525820 43526990 Adu08g01392 08 23565489 23566565 ECH
Adu08g01392 08 23565489 23566565 Adu03g00082 03 728178 729209 PCT