Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01388 ATGGATGCTCACCAAGAAACACTGATATTCAACAATGATTATGAGGTGCATGATTTCACTGAGGACCCCAACTTTGATCAGCTCATCAATTTAATTAGAGGGGATAATAATAATGAAGATGATGCTGCTGTGTTCTTTAACTATGGTTCAGACATTATCACCAATGATTGCTTCCTTGATGATAATCAGAATCAGAATCATTTACTTCTTCCATATGATCAGATTCATCAGAGCCATAACAACAATAGTAGCAATGAAGTGATGATGAATAATGTGTGTGGTGATGATCCTAGCCCTACTAACCTTATTAGCTCCTTCTCTTGCTTTGATGAAGGGGTGGTTAATAGAGAAAATGAAGGAGAGTATTCTTCTGCAACCACAACTGCAACTGATGAGGCTAATCTTAGTGGTAAACCAAGGCTGAAAGCTGATAGGTCCAAGACTCTCATCTCTGAGAGGAGGAGGAGAAGCAGAATGAAGGAGAAGCTTTATGCACTCCGCTCTTTGGTCCCTAACATAACAAAGATGGATAAGGCATCGATCATTGGAGATGCATTATCGTACGTGCATGAGCTTCAAGCACAAGCTAAGAAGCTAAAGGCAGAGGTTGCAGGACTTGAAGCATCTCTGTTTGTGTCAGAAAATTACAAAGCATCCTTTGATGACAATTACATAAAAACTGTTCAAGTCACACACAATAGCCACCCGATCAACAAGAAGATAGTGCAGATAGAGATGGTTCAAGTGGAAGAAAGAGGGTATTATGTGAAGATAGTGTGCAACAAAGGAGGAGGAGTTGCTGCATCACTCTACAGGGCTCTCGAGTCTCTTGTGGGTTTCAGTGTTCGGAATTCAAACTTTGAAACTGTTTGTGACACTATACTACTTACATTTACATTGAATGTTAAAGGCTTTGAACCAGAAGTTAACCTGCCAAACTTGAAGCTATGGGTGACAGGCGCTCTTCTCAACCAAGGCTTTGAATTCATGGCAAATTTTCATTATTGA 1008 0.4008 MDAHQETLIFNNDYEVHDFTEDPNFDQLINLIRGDNNNEDDAAVFFNYGSDIITNDCFLDDNQNQNHLLLPYDQIHQSHNNNSSNEVMMNNVCGDDPSPTNLISSFSCFDEGVVNRENEGEYSSATTTATDEANLSGKPRLKADRSKTLISERRRRSRMKEKLYALRSLVPNITKMDKASIIGDALSYVHELQAQAKKLKAEVAGLEASLFVSENYKASFDDNYIKTVQVTHNSHPINKKIVQIEMVQVEERGYYVKIVCNKGGGVAASLYRALESLVGFSVRNSNFETVCDTILLTFTLNVKGFEPEVNLPNLKLWVTGALLNQGFEFMANFHY 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01388 335 Gene3D - 141 215 IPR036638 GO:0046983
Adu08g01388 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 192 IPR011598 GO:0046983
Adu08g01388 335 SMART finulus 149 198 IPR011598 GO:0046983
Adu08g01388 335 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 10 331 - -
Adu08g01388 335 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 10 331 - -
Adu08g01388 335 Coils Coil 189 209 - -
Adu08g01388 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 212 IPR036638 GO:0046983
Adu08g01388 335 Pfam Helix-loop-helix DNA-binding domain 150 193 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01388 Adu-Chr8 23539502 23540959 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g01388 12 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 50.000 1.15e-94 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Adu08g01388 HLH 1.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01388 - - aip:107612257 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01388 08 23539502 23540959 Adu08g01388 08 23539502 23540959 ECH