Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01376 ATGGGAAGAGCTCCTTGCTGTGACAAGGCAAATGTGAAGAGAGGGCCATGGTCACCTGAAGAAGACACAAAGCTGAAAGAGTACATAGACAAGCATGGAACTGGTGGAAACTGGATCGCTCTTCCTCACAAAGCTGGTCTAAAGAGGTGTGGAAAAAGTTGTAGATTGAGATGGCTTAACTATTTGAGGCCTAACATTAAGCATGGTGAATTCTCCGACGAGGAAGACAGAATAATCTGCAGTCTTTATGCTAATATTGGAAGCAGATGGTCAATTATAGCAGCACAGTTGCCAGGAAGGACTGACAATGATATCAAGAACTATTGGAACACCAAGCTCAAGAAGAAGCTCATGGCTTTGCTTCCGACTCATCATCATAATCAACAAAACCCACCACCATTCATACTACTACTACTACTACTCCACCAAGCATCAATAATGTCCAGTCTCCCTTTCTACCAAAACCAACAACAAGAGCAGCAGCAAGCATTGATGAGCCCCATGCAACAGTATTACCCTATGTTTGGGAGTGAAGGGAGTTGCAGTTCATCTGATGGGAGCTGTAGCCATGGTGGGAGGGAGATGAAGAAAGAAGAAATGGGGTTTCATCATCATCACATGTTTCATCATCATGAAGAGCAGCAGCAGCAGCCTATGGTGGTTGATGATGATGGTATTAATAATAATAACCAGTGGACAGAGAAGCTAGACAAGTGGCTGTTCCAAACGGCAAACCCATTGGACTATGATTTAGAGGTGATTAAACAACTTGTTATTAGCAGCAGCGGCAATGATGGGTTGTTCAGTGTTGATGAAAACAAGACCGTACAAGAGAGCAAGCCCATCATCTACAATTACAAGTACTCTGACTGA 873 0.4341 MGRAPCCDKANVKRGPWSPEEDTKLKEYIDKHGTGGNWIALPHKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICSLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMALLPTHHHNQQNPPPFILLLLLLHQASIMSSLPFYQNQQQEQQQALMSPMQQYYPMFGSEGSCSSSDGSCSHGGREMKKEEMGFHHHHMFHHHEEQQQQPMVVDDDGINNNNQWTEKLDKWLFQTANPLDYDLEVIKQLVISSSGNDGLFSVDENKTVQESKPIIYNYKYSD 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01376 290 Gene3D - 69 132 - -
Adu08g01376 290 Gene3D - 7 68 - -
Adu08g01376 290 PANTHER OS09G0431300 PROTEIN 1 264 - -
Adu08g01376 290 CDD SANT 16 62 IPR001005 -
Adu08g01376 290 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Adu08g01376 290 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Adu08g01376 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Adu08g01376 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Adu08g01376 290 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Adu08g01376 290 PANTHER TRANSCRIPTION FACTOR RAX3 1 264 - -
Adu08g01376 290 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Adu08g01376 290 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Adu08g01376 290 CDD SANT 70 111 IPR001005 -
Adu08g01376 290 SMART sant 13 64 IPR001005 -
Adu08g01376 290 SMART sant 67 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01376 Adu-Chr8 23391495 23392742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g01376 1 119 MYB Transcription Factor Family AT5G57620 89.076 2.70e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu08g01376 Myb_DNA-binding 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01376 K09422 - gmx:100796382 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01376 08 23391495 23392742 Adu03g00104 03 954280 955723 PCT