Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Adu08g01350 | ATGTCTGAGGATGTTGGTAATAATATGAAGGACTCTTGGTTTTTCGAGAAGAATTTTAATGGCCTGTCCGACGAGGCTTTTGATGATGTCTTCAGCTTTTTAGATTTCCCGTTGGAAGATGTGGAACCGAATGTTGTTGAAGAAGACTGGGATGCTCAGTTTAAACGCATTGAGCCATGTTATGATGTTTTTTCGGTGTCATCGACTGTGCTCTGTAGTGATAAAACCCAAAATGAAAAGCCACAACTTGGGGGAAGTTTCTCTGGTTCTAGTAATGAGGTTTCTCCAATAAAACAGCTGGATGAGACTGCTGGATTGGATGTTGGAAAAACCATTCTGAACCAGAATTCATCTCTCAATGGAAAAGATTTGCATCAACTTCGAACCTACAGCCCAGTTTCTGTTTTTGAAAGCAGTAGTACTTCTTCAGCTGAGAATTCCAACCTTGATCTACCTGCCATCCCGGTAAAGCGTGCTCGAAGCAAGCGCCAGCGTGCATCAAGCTTCAGTCCTCTATTTGTGATTCCTTCTGTTCCTACTTCACCGGCTTGGCAAATTTATGAAATGAAAGTTGACCCGGAATCAAATTTAGGGACACACCATGCCGGGAAATCATTAAACAACACAAAAAAACAGAGGAAAAGGGATCTCCCTGTGCTTTCAGGTCACAATGACATGAAAAGATCCTCATCACAGGAGCCAGTTCCCACCAGAAAATGCATGCATTGCGAGGTGACAAAGACCCCACAGTGGAGAGAGGGACCGATGGGTCCAAAGACGCTGTGCAATGCCTGCGGTGTTCGATACAGGTCTGGTCGCCTCTTCCCCGAATATCGACCAGCAGCTAGCCCCACTTTTGTACCATCAGTGCATTCAAACTGTCATAAGAAGGTCATAGAGATGAGAAGCAAAGGCATCCAGGCAAGCCTTAGGAATCCATTGTCAGCGATGTCGAACCTTCATGGAAATTCTGTAGGATAA | 981 | 0.4465 | MSEDVGNNMKDSWFFEKNFNGLSDEAFDDVFSFLDFPLEDVEPNVVEEDWDAQFKRIEPCYDVFSVSSTVLCSDKTQNEKPQLGGSFSGSSNEVSPIKQLDETAGLDVGKTILNQNSSLNGKDLHQLRTYSPVSVFESSSTSSAENSNLDLPAIPVKRARSKRQRASSFSPLFVIPSVPTSPAWQIYEMKVDPESNLGTHHAGKSLNNTKKQRKRDLPVLSGHNDMKRSSSQEPVPTRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVPSVHSNCHKKVIEMRSKGIQASLRNPLSAMSNLHGNSVG | 326 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Adu08g01350 | 326 | PANTHER | GATA TRANSCRIPTION FACTOR 13-RELATED | 27 | 304 | - | - | |
Adu08g01350 | 326 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 237 | 295 | - | - | |
Adu08g01350 | 326 | MobiDBLite | consensus disorder prediction | 195 | 235 | - | - | |
Adu08g01350 | 326 | CDD | ZnF_GATA | 239 | 286 | IPR000679 | GO:0006355|GO:0043565 | |
Adu08g01350 | 326 | PANTHER | GATA TRANSCRIPTION FACTOR | 27 | 304 | - | - | |
Adu08g01350 | 326 | Pfam | GATA zinc finger | 240 | 273 | IPR000679 | GO:0006355|GO:0043565 | |
Adu08g01350 | 326 | ProSitePatterns | GATA-type zinc finger domain. | 240 | 265 | IPR000679 | GO:0006355|GO:0043565 | |
Adu08g01350 | 326 | ProSiteProfiles | GATA-type zinc finger domain profile. | 234 | 270 | IPR000679 | GO:0006355|GO:0043565 | |
Adu08g01350 | 326 | Gene3D | - | 231 | 313 | IPR013088 | GO:0006355|GO:0008270 | |
Adu08g01350 | 326 | SMART | GATA_3 | 234 | 284 | IPR000679 | GO:0006355|GO:0043565 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Adu08g01350 | Adu-Chr8 | 22804367 | 22808469 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Adu08g01350 | 16 | 304 | C2C2-Gata Transcription Factor Family | AT1G08010 | 41.638 | 5.30e-55 | 179 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-GATA | Adu08g01350 | GATA | 3.7e-16 | CL0167 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Adu08g01350 | - | - | gmx:100813303 | 405.216 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Adu08g01350 | 08 | 22804367 | 22808469 | Adu08g01350 | 08 | 22804367 | 22808469 | ECH | |
Adu08g01350 | 08 | 22804367 | 22808469 | Adu03g00145 | 03 | 1380113 | 1383706 | PCT |