Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01349 ATGAAGGAAGCTGAGAAGAGCTTGGATCCGCAGCTATGGCATGCTTGCGCCGGTGGCATGGTTCAGATGCCTCCGGTGAACTCCAAAGTCTTCTACTTTCCACAAGGGCATGCCGAGCATGCACAAACTAACGTTGATCTGGCAGCTCCCCTGAGGGTTCCTTCCTTCATCCTCTGCCGCGTGGCGCAGGTGAAATTCCTTGCTGACCCTGAAACCGATGAAGTCTTTACAAGGATAAGCTTGGTTCCCCTGAGGAATTCAGAGCTTGATTCTGATGATGGCGGTGTCCTTGATGCCAATGCTTTGGAGAATTCAGAAAAGCCTGCTTCTTTTGCAAAGACCTTAACTCAATCCGATGCAAACAATGGTGGGGGGTTCTCTGTTCCAAGGTACTGTGCAGAAACAATCTTCCCCCGACTCGATTACTCCGCAGAGCCGCCGGTTCAGACCGTGATCGCCAAGGATGTTCATGGTGAAGTTTGGAAGTTCAGGCACATATATAGGGGCACACCGAGGAGGCACTTGCTCACAACAGGGTGGAGCAGTTTTGTCAACCAGAAGAAACTGGTTGCAGGGGATTCAATTGTGTTCCTGAGGGCCGAAAACGGTGATCTCTGTGTTGGGATTAGGCGTGCCAAGAGGGGAACAGGTGGAGGATCGGAGGCGCCATCGGGATGGAGCTCCGGGAATGGAAGTTGTGGTCTTGGCTCTTATGGAGCATTCTCTGCCTTCTTGAGAGAGGAGACCAAGCTGTTGAGGAATGGTTGTGGGAATTCGAGTCCCGGCGGCGGCGGCGGCGGCGGCGGTTTGAGTGGAAAAGCTAAAGTAAGTCCTGAATCTGTGAGGGAAGCTATAACACTGGCTGCTAGCAATCAGCCATTTGAAGTTGTTTATTATCCAAGGGCAAGCACACCGGAGTTTTGCATCAAGGCTTCGGCTGTGAGGGCAGCAATGAGGATACAATGGAGCACTGGGATGAGGTTCAAGATGGCCTTTGAGACTGAGGATTCTTCTAGGATCAGCTGGTTCATGGGGACCATTGCTTCTGTTCAGGTTGTTGATCCTATCCGCTGGCCTAATTCCCCTTGGAGACTTCTTCAGGTTACTTGGGATGAGCCAGATTTGTTACATAATGTGAAGCGTGTAAGCCCATGGTTGGTTGAATTGGTATCAAGCATGCCAGCCATCAATCTATCGCCCTTCTCTCCGCCAAGGAAGAAACTCCGGTTTCCACAACACCCCGACTTCCCCCTCGACGTTCAATTTCCTATACCGTCGTTTTCAGGCAACCCCCTAGGGCCTCATAGCAGCCCCTTGTGTTGTCCATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTCTTTCAGATCTCTACCTTAACAACAAACTGCAGTTGGGGGTGATTCCGGCCGCGAATGTCCAGCGACTGGATTTGCATTCGGGGTTTCCCAGTGGCGGCAACTTCACTGGCCATGACAAGAGTAAAGAAAGCTTGTCATGCTTGCTAACCATGGGAAATTCTCACAAGAAGAGTTTGGAGAAGTCTGATAATGTGAAGAGACACCAATTTTTGCTTTTTGGTCAACCAATACTCACTGAGCAACAAATCTCCAGAAGGCCTTCTTCTTCTGGTGCTGATGATGATGTGTTGCCTCAGAATGGTACCAAGAAAACTTCAATAGATGAGAATGAGAACAAAGACAAAGAGAAGTGGTTTTTCAATGACTCTCAATCTCCTCTTTCACAACAATTTTCACCTGGTAAATCAAAATCATCTTGTAGCACAGAGTTATCTTGGCAAATTGGGTTGGATACTGGTCATTGCAAGGTGTTCATGGAGTCAGAAGATGTTGGAAGGACACTTGACCTGTCACGTCTTAGCTCCTATGATGAACTGTATAGGAGACTCAGCAACATGTTTGGAATCGAAAGATCTGAGTTGTTGAGTCATGTACTCTACCGTGATGCAACTGGTGCTGTCAAGCAAACTGGTGAAGAACCCTTCAGTGACTTCATGAAGACAGCAAAAAGATTGACAATTCTAACGGATCCAAGCAACAAGGATGCAAGGAGGGCATGGATTACAGGTACTCGGAATGGTGAACATGGATTGGATGCATCAAACAAGACAGGTCCTCTTAGCATATTTGCTTGA 2178 0.4844 MKEAEKSLDPQLWHACAGGMVQMPPVNSKVFYFPQGHAEHAQTNVDLAAPLRVPSFILCRVAQVKFLADPETDEVFTRISLVPLRNSELDSDDGGVLDANALENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGTGGGSEAPSGWSSGNGSCGLGSYGAFSAFLREETKLLRNGCGNSSPGGGGGGGGLSGKAKVSPESVREAITLAASNQPFEVVYYPRASTPEFCIKASAVRAAMRIQWSTGMRFKMAFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSSMPAINLSPFSPPRKKLRFPQHPDFPLDVQFPIPSFSGNPLGPHSSPLCCPSDNAPAGIQGARHAQIGISLSDLYLNNKLQLGVIPAANVQRLDLHSGFPSGGNFTGHDKSKESLSCLLTMGNSHKKSLEKSDNVKRHQFLLFGQPILTEQQISRRPSSSGADDDVLPQNGTKKTSIDENENKDKEKWFFNDSQSPLSQQFSPGKSKSSCSTELSWQIGLDTGHCKVFMESEDVGRTLDLSRLSSYDELYRRLSNMFGIERSELLSHVLYRDATGAVKQTGEEPFSDFMKTAKRLTILTDPSNKDARRAWITGTRNGEHGLDASNKTGPLSIFA 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01349 725 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 702 IPR044835 GO:0003677|GO:0006355|GO:0009725
Adu08g01349 725 Gene3D - 109 213 IPR015300 -
Adu08g01349 725 PANTHER AUXIN RESPONSE FACTOR 2 702 - -
Adu08g01349 725 Pfam Auxin response factor 284 367 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Adu08g01349 725 Gene3D - 321 395 - -
Adu08g01349 725 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Adu08g01349 725 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Adu08g01349 725 MobiDBLite consensus disorder prediction 543 575 - -
Adu08g01349 725 Gene3D - 612 696 - -
Adu08g01349 725 MobiDBLite consensus disorder prediction 543 566 - -
Adu08g01349 725 SMART B3_2 111 213 IPR003340 GO:0003677
Adu08g01349 725 CDD B3_DNA 110 211 IPR003340 GO:0003677
Adu08g01349 725 ProSiteProfiles PB1 domain profile. 613 693 IPR000270 GO:0005515
Adu08g01349 725 MobiDBLite consensus disorder prediction 255 275 - -
Adu08g01349 725 SUPERFAMILY DNA-binding pseudobarrel domain 104 217 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01349 Adu-Chr8 22786155 22790230 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g01349 5 691 B3 DNA Binding Superfamily AT4G30080 57.940 0.0 754
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Adu08g01349 B3 4.7e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01349 - - gmx:100778135 1101.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01349 08 22786155 22790230 Adu08g01349 08 22786155 22790230 ECH
Adu08g01349 08 22786155 22790230 Adu03g00146 03 1391750 1394686 PCT