Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01335 ATGACTATTCAGAAGAAATATGATGCTGCTGCAGAAACTCTTTCATGCAAACGAACACTTTCACTTCCACTTCACGGGTTTGATGATTCAATGGGGTTGAATGAAGAAACTACAGATGTTCATGATTGGAAAGAACAGAATCTTGTGGCGGATATAGCATCATCAAGAACATGTTCATCATCAGAAGATGCAAAATCTCAGGATTATGTAGCCATAAAGATGCCATTGACACCAAGTCCAACTCCAACTCATAAGAGAGTCAATTTTCTTGTGACTTCTCGTTCTGTTGATGCCCCAATAAATACTACTTCTTCTTCTTCTTCTTCATCATCATCTTCTTCAGGACCCTCATCTAGAACTAAATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCCATAAGAAACATATTGCCAAAATTCACCTTAAGGAATCATAGGACACCGAATTCGGATATCGAAAAGGCTAATATTTTAGCTCCAGAATGTTCCTCTTTAGATCATCATCAAGAGAAAGACAAGTCTTCTTCAATCTCAAGATCGGTGTCTCTCACTAAGATGTTCACAACTAAGATCAAGAGAACTTCATCATTACCTGTAGAAGAATTGGGTCATGCAAACACAGATTCTGTTCAGGCTGCAATTCTTGGTGGTTCTCCATGTAGGATAGAGACTCAGGGGATGATAGCTCGGTCTCGTTCAGTACCTATCAATACCAAAGAAAAAGGCCATAGGAGAATGGATTCATTCTTCCGTGTTGTTCCTTCCACTCCTCTATTAAAAGAAGGGAATGATTGGTTAACCAAGTACACAACAAAAGATACTGAAAATGGAGATGATGATGATGATGATGGAGAAGATATAGCTGAAGAAGAAGCTGTGTGCAGAATATGTCTGATTGATCTGTGTGAAGGAGGGGAGACACTGAAGATGGAATGCAGCTGCAAAGGTGAACTTGCTCTTGCTCACAAAGACTGTGCCATTAAATGGTTCACTATCAAGGGCAACAAGACCTGTGATGTTTGTAAGGAGGAGGTTAGGAACCTTTCTGTCACTCTCTTACGCATCCGAAATGTTCAAACTCAGAATAATCCTGGAGCAAGCTCTCAGCACCATGATGATTACAGGTTTTGGCAGGAACTGCCAGTGCTTGTGATTGTAAGCATGCTTGCCTATTTCTGTTTCCTTGAACAGTTATTGGTTGGTGAAATGGGGCACAATGCAATTTCCATATCTCTTCCATTTTCTTGTGTATTAGGCCTACTGTCTGCCATGACATCAACCACCATGGTGAAGAGCAAGTTCACATGGGTTTATGCATCTGTCCAATTAGTTCTGGTGGCTCTCTTTGCACACATATTTTACTCCCTGAATGGTCAATTTCAGGTTACCAAGAGAGCAATTCTGTCAATAATTCTTGCAACATTTGCTGGGTTTAGTGTGGTGATGAGTGGAAGTTCAATTATTGGTGAGATTCTTAGATGGAGGAGAACTTGGCAGCAACAACAACAACAACAACAACAACAACAAAGTGGAGGAGTGCAAAATCAACACAACTCAAATCACACCTGA 1584 0.4021 MTIQKKYDAAAETLSCKRTLSLPLHGFDDSMGLNEETTDVHDWKEQNLVADIASSRTCSSSEDAKSQDYVAIKMPLTPSPTPTHKRVNFLVTSRSVDAPINTTSSSSSSSSSSSGPSSRTKSSSSSSSSSSSSSSSSIRNILPKFTLRNHRTPNSDIEKANILAPECSSLDHHQEKDKSSSISRSVSLTKMFTTKIKRTSSLPVEELGHANTDSVQAAILGGSPCRIETQGMIARSRSVPINTKEKGHRRMDSFFRVVPSTPLLKEGNDWLTKYTTKDTENGDDDDDDGEDIAEEEAVCRICLIDLCEGGETLKMECSCKGELALAHKDCAIKWFTIKGNKTCDVCKEEVRNLSVTLLRIRNVQTQNNPGASSQHHDDYRFWQELPVLVIVSMLAYFCFLEQLLVGEMGHNAISISLPFSCVLGLLSAMTSTTMVKSKFTWVYASVQLVLVALFAHIFYSLNGQFQVTKRAILSIILATFAGFSVVMSGSSIIGEILRWRRTWQQQQQQQQQQQSGGVQNQHNSNHT 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01335 527 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 36 522 - -
Adu08g01335 527 ProSiteProfiles Zinc finger RING-CH-type profile. 291 353 IPR011016 GO:0008270
Adu08g01335 527 PANTHER OS02G0165000 PROTEIN 36 522 - -
Adu08g01335 527 SUPERFAMILY RING/U-box 295 350 - -
Adu08g01335 527 Pfam RING-variant domain 299 346 IPR011016 GO:0008270
Adu08g01335 527 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 356 IPR013083 -
Adu08g01335 527 CDD RING_CH-C4HC3_MARCH 299 347 - -
Adu08g01335 527 SMART ringv_2 298 347 IPR011016 GO:0008270
Adu08g01335 527 MobiDBLite consensus disorder prediction 98 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01335 Adu-Chr8 22586813 22589664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g01335 285 354 C3H Transcription Factor Family AT2G37950 46.479 4.71e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01335 - - gmx:100815599 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01335 08 22586813 22589664 Adu08g01335 08 22586813 22589664 ECH
Adu08g01335 08 22586813 22589664 Adu03g00166 03 1524455 1527839 PCT