Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01327 ATGATGATGATGTCTTCATCAGAAGCCTTTTCATCATCACCATCAGCAGCAGCTCCTTCGAGTTCCAGCATCATCCATTACGGAAACCCTAATTCAATTCCAAGAGTAGTGAAGAGAAAGCGAAGTCAACCAGGAAGACCAGATCCAGAGGCAGAAGTAATAGCTCTATCGCCAAAGTCGCTGATGGCAACAAACCGTTTCGTATGCGAGATATGCAAGAAAGGGTTTCAGAGGGACCAGAACCTACAGCTGCACCGGCGAGGGCACAACCTGCCGTGGAAGCTTCGGCAGAGGGAGAAGGAGGAGGTGGTGCGGAAGAAGGTGTACGTATGTCCGGAGAAGAGCTGCGTCCACCACGAGAGTTCTCGTGCGCTGGGGGACTTGACGGGGATAAAGAAACACTACAGCAGAAAGCACGGCGAGAAGAAGCTGAAATGCGAAAAGTGCTCCAAGAAATACGCTGTTCACTCTGATTGGAAGGCTCATACCAAGATCTGTGGCACCAGAGAGTATCGTTGTCACTGTGGCACTCTCTTCTCCAGGAAGGACAGCTTCCTCACTCACAGATCTTTTTGTCAAGCCTTGCCTCAATTTCATACTGCTTCCATGGCACCACCATCACTACCACTATGGCTTGACCAAACAATCAACCAAGAGAACAAAGTCGGAGACTTGTTGTACTCATCATCATCATCCACACTCATGTCGGCCACTGCGTTGTTGCAGAAAGCTACACAAATGGAATCTACCCCCATGGCTTCTAACAACGACAATGCCTTTGTTGGATTCATGCTCAGCTCTTCGTCTCAGTTCTCCTCCTTCAATAACGATTCAAACTTGATGCAACACCCACTTGGGTTGACCAGAGACTTTCTTGGCGTTGGGGTCACCACCAAGTTCATGACTAATCCAATGGGATCCCTCCTCGACTTCCAAACCAATCCTCTTCATCATCATCAAGAATATATGTAG 972 0.4846 MMMMSSSEAFSSSPSAAAPSSSSIIHYGNPNSIPRVVKRKRSQPGRPDPEAEVIALSPKSLMATNRFVCEICKKGFQRDQNLQLHRRGHNLPWKLRQREKEEVVRKKVYVCPEKSCVHHESSRALGDLTGIKKHYSRKHGEKKLKCEKCSKKYAVHSDWKAHTKICGTREYRCHCGTLFSRKDSFLTHRSFCQALPQFHTASMAPPSLPLWLDQTINQENKVGDLLYSSSSSTLMSATALLQKATQMESTPMASNNDNAFVGFMLSSSSQFSSFNNDSNLMQHPLGLTRDFLGVGVTTKFMTNPMGSLLDFQTNPLHHHQEYM 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01327 323 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 15 196 - -
Adu08g01327 323 SMART c2h2final6 67 89 IPR013087 -
Adu08g01327 323 SMART c2h2final6 109 139 IPR013087 -
Adu08g01327 323 SMART c2h2final6 144 164 IPR013087 -
Adu08g01327 323 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Adu08g01327 323 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Adu08g01327 323 SUPERFAMILY beta-beta-alpha zinc fingers 66 164 IPR036236 -
Adu08g01327 323 Gene3D Classic Zinc Finger 63 90 - -
Adu08g01327 323 MobiDBLite consensus disorder prediction 1 50 - -
Adu08g01327 323 Gene3D Classic Zinc Finger 101 193 - -
Adu08g01327 323 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 15 196 - -
Adu08g01327 323 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01327 Adu-Chr8 22504412 22506044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g01327 38 311 IDZ Gene Family AT4G02670 52.698 1.13e-101 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu08g01327 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01327 K25870 - adu:107461721 610.142