Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01308 ATGGATCCTTCTAGTGGACAACACCATCAGGAACTGGAGAACATGATAGGATGCTCCACAAAGAGTCAGCAACAAGAAAGAAAGCCAAGGCCACAACCAGAACAAGCACTCAAATGTCCAAGATGTGACTCTACCAACACCAAATTCTGCTACTACAACAACTACAGCCTCTCTCAGCCAAGGTACTTCTGCAAATCTTGCAGAAGATACTGGACCAAAGGTGGAACACTCAGGAATGTTCCTGTTGGTGGTGGATGCAGGAAGAACAAGAGATCTTCTAATTCTTCTTCTTCATCAACTACTTCCTCTTCATCTAATTCACCTGCACCCTCTTCAAGGAGGCCTCAAGATCATCATGGATTCATCTCACCTAATAATCCTCTCATCACTGCTTTCCCTCACTTGGCTTATGATCATCATCCTTCTTCTTCTCCCACCAGTGATCTCACCTTAGCCCTTGCAAGGCTCCAGAAACAAACAATGCCTTTTGATGATCATGATCTCTCAATCTTGGGCAACCCCACAAGCTCCCTCTGTGATATTCTTGGAAATCAAGGCCTTAACACCCACAACACTTCATCAACTGGCTTCTTGGAAGCACTTAGAACCGGATTCCAAGGAAACAATAGTAATAATAACGCTCTTCATCATCAGAATCTCTACTATTCATATGGGAATGGGGACATGGGTGAGGTTGTGGACAATGGTGCTGTTAATGCTGGAGACATGTTGCTACCTAATCATTATGATTCAGAGATGAGCAATGCAGCAACTCAAGCAGTGAGTGTCAGCACCATGAAGCAAGAACTATGCAGTGAAGCTACTAAGGTTCTTGGTGGTGGCGCTTTTCCATGGCATAACAGTAGTAATGGGGACACAAACATGGGTGAATTTGATTCAGCAAGAGCAACTTGGAATGCTGGTTTCACATCTTCAAATTGGCATGGCCTTCTCCATAGTCCTCTAATGTAA 972 0.4403 MDPSSGQHHQELENMIGCSTKSQQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSNSSSSSTTSSSSNSPAPSSRRPQDHHGFISPNNPLITAFPHLAYDHHPSSSPTSDLTLALARLQKQTMPFDDHDLSILGNPTSSLCDILGNQGLNTHNTSSTGFLEALRTGFQGNNSNNNALHHQNLYYSYGNGDMGEVVDNGAVNAGDMLLPNHYDSEMSNAATQAVSVSTMKQELCSEATKVLGGGAFPWHNSSNGDTNMGEFDSARATWNAGFTSSNWHGLLHSPLM 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01308 323 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 6 322 - -
Adu08g01308 323 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
Adu08g01308 323 MobiDBLite consensus disorder prediction 1 26 - -
Adu08g01308 323 Pfam Dof domain, zinc finger 35 91 IPR003851 GO:0003677|GO:0006355
Adu08g01308 323 MobiDBLite consensus disorder prediction 1 38 - -
Adu08g01308 323 MobiDBLite consensus disorder prediction 81 125 - -
Adu08g01308 323 MobiDBLite consensus disorder prediction 88 113 - -
Adu08g01308 323 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
Adu08g01308 323 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 6 322 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01308 Adu-Chr8 22254946 22256523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g01308 1 323 C2C2-Dof Transcription Factor Family AT2G28510 35.694 1.02e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Adu08g01308 zf-Dof 6.9e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01308 - - aip:107612899 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01308 08 22254946 22256523 Adu08g01308 08 22254946 22256523 ECH
Adu08g01308 08 22254946 22256523 Adu03g00194 03 1823418 1824864 PCT