LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu08g01295	ATGCGGACCAAAGAGCTGTGCTACCCACCGTTAAAGCTAAGTGTGGACATCAAACCATCAATACCTCTTCCAGGAATCATAGAACTATCTGAAGATGAGCCTAATGCAACTCCGCCGCTTGAAACTACTGAACCTGTCCAAGTTTCACAAATAGTGTATCAACAACCTGATGAAGATGTGAATAATTCCAAGTGGGATGATGCCACTGACCAACTCCAACATCTCCCAGAATCTGTGTTCAATCTGTTGACCTGCATTGACCCTCCCACATTTTATGGTCTTGAACCTTACGTTAATCAGCTGGAACCCAGTGTCAATAACGAGGATCAACACGACCAACTGGATCCAATAGGACCAATAATTTCACTTCATCCATTCCGGGCTACTGAGGTTGTTTCAACTGAGAATGCAGGGTTTCCAAATGGTCAGAGTCCTCCACCCCTGAGTCCTAACATTGGCCTTTCCCCACCGCATTCTCCAATCATGCAAGACTTTTATTCGGTTGTGAGGGTGATATCTGAGTACCAGTCAAAACACTATTCTATGCTACTTCCGTCTACTTTCTCTTCGCTTGCGTTTCCTTCGAGGCCTGATTTCGTTCGCGTTAGAGAGTTACACAAGCCACCAATCATCATGAAGCTTCGATGGAGGAGCCTCAGGTCATCAGAAGCCTTTCTTACCAGGGGTTGGAGAAAATTTTCAGTCGACCATGGCCTAAAATGTGGAAGTGTAGTTCATTTCTGCGTCCCTATTAATGATGAAACTACTATAATTGTTTCTATATTACCCTTCATGACCACCACCGCCGTTTTGGTCCCCATCGTATGTGCGTTTAACCCCATTCAGTTTTATGCTTTCCCCGTATTTCTCCGTTACACAGAATGGTGTTCTGAAAATGTAATTGAGGAGATTGTACTGTTGTTTATGGCCTCATGTACTGTCCATTGCTCCAGTGAGAGTTCAAGTAACAACTCTTTACAGCTCCACATATATTGGTTACAAATGGCAAGCACGTACAACAACCTCAAGGATATTGAGGCATCTTCAGACCACTTAATATTGAGGATTAAAGTGAGAGTCGTGAAAATATGGTCATTGTCTCCTGCTGAGCAAAAATACGTGAAGCCAACTTTAGAGTTGGTGGTCATGGATTACGTGGGGGATCGAATCCAGTGCACTATTAGGAATGCTCAGAGGAGGCTCTTTGAAGATGAGTTATCAGAGGGAAAAATCTATATTGTATGTAACTTCTCAACTTCCTTGAATGACCAGAAATACAAGGCCACTAATCATGCATGTAGGATATACTTCAAGAGGGATACTCAACTTCAGATGGTCCATGATCCATCCTTTTCGGAGAATGTGTTTCGTTTTGTTCCTAATGATCTAATATTGAACCACACAAATGCTCAGTCGCATCTTATAGATGTTATTGGTCTACTTACTGGCAAGGGTGACATAATTGAATTTACTAAGAATGGCAAGAAGTGCAGCTACATTGTTCTCGAGCTTGATGACATGCAGGGAAAAGGCAAGATTAGGTGTACACTTTGGGAGGATTTTGCAACTATGTTGGTCAAGCACATTGAAGAGCAACCAACATCAGAGTACATCATCATTGTACAGTTCGCTAAGTTCAACCTCTTTAAAGGTGCAATGGGCATATCAAATACCAATCATAATTCAATTCTCTACATCAATGCGGACTTCCAAGAGGTTAAGGATTTTCGCAAGAGCGTCGTCATGGCGGGGGTTCCACGTGCAAACCAACTATCCCAAATTGCTGCGGAGCCAGCGTACTCTATGGAGGACGATCTCATCAACGTCTCCATTTATAAACCCATTTCTGAACTCAAGGCATCCATTGAGAATGGTAGCTTCGTGACAATTGCAACTGTTGCTGATGATACCGATACGGCTTCATTCCTTCTTTATGACAAGGAAGCGGCCAAATATCTTGGAATCTCTGCCTCTGACCTCAGGCTTGCACAACTAACTAGGGGTGGAGTAAATGAGGAATACCCAATAGAGCTCAATTCCTTTAGGGGTAAGAAATTCCTTTTCAAGGTTTCTGTCAAGATGGAAGATCTAAATTCTTTCCAGCCTTGCAAGGTCATTGTGATGAAGATGACTGATGAGATATCGCTTATAACAAAATTTTTAGGAAAGCATGATATATACCAGCAAAACCTTGCACTGGAACACTCAGAACTATTGACCCTGCAAACTGCTTCCACCGACACGCCAAAGGGCACGGGTTCTCCTTCTGTTGTGGCTTTGGTGGACAACTCTAATGATGCTTTCTCAATCCCCAAGAGAAACATTATTAGTGGTGGATGCTCTAAGCGACTCATTGATCTTTATCCAGACTCTGCTAATGGATCATCATCGAAGTGTAGAAAGCTCGAAGATGGCATTCCCGGAGTTGATAAAGTCTACCAAGATTAG	2448	0.4281	MRTKELCYPPLKLSVDIKPSIPLPGIIELSEDEPNATPPLETTEPVQVSQIVYQQPDEDVNNSKWDDATDQLQHLPESVFNLLTCIDPPTFYGLEPYVNQLEPSVNNEDQHDQLDPIGPIISLHPFRATEVVSTENAGFPNGQSPPPLSPNIGLSPPHSPIMQDFYSVVRVISEYQSKHYSMLLPSTFSSLAFPSRPDFVRVRELHKPPIIMKLRWRSLRSSEAFLTRGWRKFSVDHGLKCGSVVHFCVPINDETTIIVSILPFMTTTAVLVPIVCAFNPIQFYAFPVFLRYTEWCSENVIEEIVLLFMASCTVHCSSESSSNNSLQLHIYWLQMASTYNNLKDIEASSDHLILRIKVRVVKIWSLSPAEQKYVKPTLELVVMDYVGDRIQCTIRNAQRRLFEDELSEGKIYIVCNFSTSLNDQKYKATNHACRIYFKRDTQLQMVHDPSFSENVFRFVPNDLILNHTNAQSHLIDVIGLLTGKGDIIEFTKNGKKCSYIVLELDDMQGKGKIRCTLWEDFATMLVKHIEEQPTSEYIIIVQFAKFNLFKGAMGISNTNHNSILYINADFQEVKDFRKSVVMAGVPRANQLSQIAAEPAYSMEDDLINVSIYKPISELKASIENGSFVTIATVADDTDTASFLLYDKEAAKYLGISASDLRLAQLTRGGVNEEYPIELNSFRGKKFLFKVSVKMEDLNSFQPCKVIVMKMTDEISLITKFLGKHDIYQQNLALEHSELLTLQTASTDTPKGTGSPSVVALVDNSNDAFSIPKRNIISGGCSKRLIDLYPDSANGSSSKCRKLEDGIPGVDKVYQD	815

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu08g01295	815	CDD	B3_DNA	183	263	IPR003340	GO:0003677
	Adu08g01295	815	Gene3D	-	451	585	IPR012340	-
	Adu08g01295	815	Gene3D	-	612	720	IPR012340	-
	Adu08g01295	815	Pfam	Domain of unknown function DUF223	379	470	IPR003871	-
	Adu08g01295	815	ProSiteProfiles	B3 DNA-binding domain profile.	167	265	IPR003340	GO:0003677
	Adu08g01295	815	Gene3D	-	340	448	IPR012340	-
	Adu08g01295	815	PANTHER	ANIMAL RPA1 DOMAIN PROTEIN	354	660	-	-
	Adu08g01295	815	PANTHER	REPLICATION FACTOR A 1, RFA1	354	660	IPR004591	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310
	Adu08g01295	815	SUPERFAMILY	Nucleic acid-binding proteins	470	580	IPR012340	-
	Adu08g01295	815	SUPERFAMILY	Nucleic acid-binding proteins	341	450	IPR012340	-
	Adu08g01295	815	SUPERFAMILY	Nucleic acid-binding proteins	630	712	IPR012340	-
	Adu08g01295	815	SUPERFAMILY	DNA-binding pseudobarrel domain	170	250	IPR015300	-
	Adu08g01295	815	CDD	RPA1_DBD_B_like	476	580	-	-
	Adu08g01295	815	CDD	RPA1_DBD_A_like	355	441	-	-
	Adu08g01295	815	Gene3D	-	159	264	IPR015300	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu08g01295	Adu-Chr8	22015588	22031074	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu08g01295	382	707	Core DNA Replication Machinery Family	AT5G08020	21.094	1.37e-10	62.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu08g01295	-		-	ahf:112707100	893.264