Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01261 ATGAAGAGAGTAAGAGAGCAGATAGAGGTGGATAATTGTTTGACGCTACTAAGCAAAGTTGGAGAAAGCGATAAGATTAGTTCAGTGAAGGGTAAAGAGTTAATGATAGAAGATGGTGCTTTTAAGTGCAAGACATGCAAAAGAAGCTTCACTTCTTTTCAAGCACTTGGAGGCCATAGAGCGAGCCACAAGAAGCCCAAGCTCATGGTTTTGGACCTATCATGCCATGATCACCACTTACGGGGACCCAACACTAAGCCCAGGATGCACCCATGCCCGATTTGTGGGGTTGAGTTTTCAATTGGACAAGCCCTTGGAGGACACATGAGAAAGCATAGGGTTGCCACCGCCAAAGATGATGAGGGTGATGGTAATGATCATCATAATAAGAGGTTAAATCTGTGCTTGGATTTGAACTTGACGCCATTGGAGAATGATCTTATTAAGCTCGGCCTCATGAGGAGGATTTCTCTTCTTTCATTTCATTGA 489 0.4376 MKRVREQIEVDNCLTLLSKVGESDKISSVKGKELMIEDGAFKCKTCKRSFTSFQALGGHRASHKKPKLMVLDLSCHDHHLRGPNTKPRMHPCPICGVEFSIGQALGGHMRKHRVATAKDDEGDGNDHHNKRLNLCLDLNLTPLENDLIKLGLMRRISLLSFH 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01261 162 SUPERFAMILY beta-beta-alpha zinc fingers 41 112 IPR036236 -
Adu08g01261 162 PANTHER ZINC FINGER PROTEIN ZAT5 6 149 - -
Adu08g01261 162 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Adu08g01261 162 PANTHER OS03G0279700 PROTEIN 6 149 - -
Adu08g01261 162 Gene3D Classic Zinc Finger 38 112 - -
Adu08g01261 162 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Adu08g01261 162 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Adu08g01261 162 Pfam C2H2-type zinc finger 40 66 - -
Adu08g01261 162 Pfam C2H2-type zinc finger 90 113 - -
Adu08g01261 162 SMART c2h2final6 41 63 IPR013087 -
Adu08g01261 162 SMART c2h2final6 90 112 IPR013087 -
Adu08g01261 162 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01261 Adu-Chr8 21607768 21608605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g01261 1 156 C2H2 Transcription Factor Family AT2G28710 45.087 1.13e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu08g01261 zf-C2H2_6 7.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01261 - - vra:106758971 169.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01261 08 21607768 21608605 Adu03g00243 03 2311956 2312583 PCT