Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01256 ATGTCTGCGGCACTCGATATGACCCTTGACGACATCATTAAGAACAACAAGAAGTCCGGATCAGCCGGATCCCGCGGCCGTGGTCGCCAATCCGGATCCGGACCCGGACCTACTCGCCGCTTCCCAAACCGCGCCGCCAACCGTCTTACGCCTTACGCCACCGCTAAGGCGCCGGAGACAGCGTGGCAGCACGACCTGTATGCAGATCAGGCTGTGGGAGCTTTCCCTGCGCAGGGTGGTCGAGCGTCGTCGATTGAAACGGGGACCAAGCTATACATCTCGAATTTGGATTATGGTGTTTCTAACGATGATATCAAGGAATTATTTTCTGAAGTTGGTGACTTGAAACGGCACACTGTTCATTACGACAGGAGTGGGAGATCGAAGGGTACAGCGGAAGTAGTCTTCTCGCGGAGAGCTGATGCTGTAGCTGCAGTGAAGAGGTACAACAACGTGCAACTTGATGGGAAACCAATGAAGGTAGAGATTGTTGGAACGAACATCACAACACAAGCTGTTGCTCCTGCTGCAAATGGAGGTTTTGGAAATTTGGGTGGAGTTCCCAGAAGTGGACAAGGGAGAAGTGGAGGGCCATTAGTACGACCACGTGGTGGTGGAGGTAGAGGACGTGGCCCTCCTCGAAGAGGTCGAGGGCGTGGAAGAGGTCGTGGCGGTGAGAAGGTATCTGCGGAAGATCTTGATGCTGATTTGGAGAAGTACCATTCAGAGGCAATGCAATTAAACTGA 747 0.5315 MSAALDMTLDDIIKNNKKSGSAGSRGRGRQSGSGPGPTRRFPNRAANRLTPYATAKAPETAWQHDLYADQAVGAFPAQGGRASSIETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHTVHYDRSGRSKGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKVEIVGTNITTQAVAPAANGGFGNLGGVPRSGQGRSGGPLVRPRGGGGRGRGPPRRGRGRGRGRGGEKVSAEDLDADLEKYHSEAMQLN 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01256 248 SMART rrm1_1 90 162 IPR000504 GO:0003723
Adu08g01256 248 Gene3D - 76 231 IPR012677 -
Adu08g01256 248 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 247 - -
Adu08g01256 248 CDD RRM_THOC4 89 163 - -
Adu08g01256 248 SUPERFAMILY RNA-binding domain, RBD 77 196 IPR035979 GO:0003676
Adu08g01256 248 SMART FoP_duplication_2 177 248 IPR025715 -
Adu08g01256 248 Coils Coil 230 248 - -
Adu08g01256 248 MobiDBLite consensus disorder prediction 222 241 - -
Adu08g01256 248 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 159 IPR000504 GO:0003723
Adu08g01256 248 MobiDBLite consensus disorder prediction 1 45 - -
Adu08g01256 248 PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED 1 247 - -
Adu08g01256 248 MobiDBLite consensus disorder prediction 183 248 - -
Adu08g01256 248 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 166 IPR000504 GO:0003723
Adu08g01256 248 MobiDBLite consensus disorder prediction 14 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01256 Adu-Chr8 21582865 21586532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g01256 88 163 Eukaryotic Initiation Factors Gene Family AT2G23350 36.842 3.30e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01256 K12881 - gmx:100817317 341.658