Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01240 ATGGGAGTTTGTCTGAGTGCCCAAGTTAAAGCTGAGAGCCCCTACAACACTGGGGTGAACTCAAAGAATGTGAGCACAGATGGAAATGATCTCAGTAACACAAACAGTAAGGTTTCGTCTACCTCGATGCCACCGACTCCACGGAGTGAGGGAGAGATCTTGCAGTGTTCTAATTTAAAGAGCTTTAGTTTATCAGAACTTAAGACAGCCACGAGAAATTTCCGGCCGGACAGTGTGTTAGGAGAAGGTGGTTTTGGTTCTGTTTTTAAGGGTTGGATGGATGAGAATTCTTTGGTGGCTTCCAAACCTGGCACTGGCATTGTTATTGCTGTGAAGAGACTTAATCAAGATGGCTTACAGGGTCACAGGGAGTGGTTGGCTGAAGTAAACTATCTTGGACAATTTTCTCATCCTCATCTAGTGAGATTGATTGGATACTGCCTTGAAGATGAACATCGCCTTCTCGTCTACGAGTTTATGCCTCGTGGCAGCTTGGAGAATCATTTGTTCAGGAGAGGCTCATACTTTCAACCTCTATCATGGAGTCTCCGTTTAAAGGTTGCTCTTGATGCAGCCAAAGGGCTTGCATTCCTTCACAGTGCCGAAACACAAGTGATTTACCGTGACTTTAAGACTTCCAATGTCTTGCTTGACTCGAATTACAATGCAAAACTTTCGGATTTCGGGCTAGCGAAAGATGGACCAACAGGTGACAAAAGTCATGTGTCAACAAGGGTGATTGGAACCTACGGATATGCAGCTCCTGAATATCTAGCTACTGGTCATCTTACTGCAAAGAGTGATGTCTATAGCTTTGGAGTAGTCCTACTTGAAATGTTATCCGGTAAGAGGTCGGTTGACAAGAATCGACCAACCGGACAACACAGTCTGGTGGAGTGGGCTAAACCATACCTGGCTAATAAACGCAAGGTCTTTCGAGTTTTGGACACGCGCCTCGAAGGACAGTATTCGGTTGAAGATGCCTATAAGGTAGCCACACTCACCTTGAGATGCATATCTAGAGAATCCAAGTTCAGGCCAAACATGGATGAAGTTGTTACATTACTGGAGCAGCTGCAGGCTCCTAATGCAGATGCAGGCAACCGAAATCCTTCTTGTAATGCGTCTCGCCCTCGTAGAAGAAGCGCTGATGATGTTAGCCATAGGAGGGCCACCCCTACAGCTTACCCTAGGCCCTCTTCTTCAACTCTATATACTTGA 1221 0.4578 MGVCLSAQVKAESPYNTGVNSKNVSTDGNDLSNTNSKVSSTSMPPTPRSEGEILQCSNLKSFSLSELKTATRNFRPDSVLGEGGFGSVFKGWMDENSLVASKPGTGIVIAVKRLNQDGLQGHREWLAEVNYLGQFSHPHLVRLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWSLRLKVALDAAKGLAFLHSAETQVIYRDFKTSNVLLDSNYNAKLSDFGLAKDGPTGDKSHVSTRVIGTYGYAAPEYLATGHLTAKSDVYSFGVVLLEMLSGKRSVDKNRPTGQHSLVEWAKPYLANKRKVFRVLDTRLEGQYSVEDAYKVATLTLRCISRESKFRPNMDEVVTLLEQLQAPNADAGNRNPSCNASRPRRRSADDVSHRRATPTAYPRPSSSTLYT 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01240 406 ProSiteProfiles Protein kinase domain profile. 74 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu08g01240 406 MobiDBLite consensus disorder prediction 15 50 - -
Adu08g01240 406 Gene3D Phosphorylase Kinase; domain 1 50 159 - -
Adu08g01240 406 MobiDBLite consensus disorder prediction 362 406 - -
Adu08g01240 406 CDD STKc_IRAK 80 359 - -
Adu08g01240 406 PANTHER OS01G0588500 PROTEIN-RELATED 25 373 - -
Adu08g01240 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Adu08g01240 406 Pfam Protein tyrosine and serine/threonine kinase 78 355 IPR001245 GO:0004672|GO:0006468
Adu08g01240 406 SUPERFAMILY Protein kinase-like (PK-like) 52 358 IPR011009 -
Adu08g01240 406 Gene3D Transferase(Phosphotransferase) domain 1 160 376 - -
Adu08g01240 406 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL11-RELATED 25 373 - -
Adu08g01240 406 MobiDBLite consensus disorder prediction 362 377 - -
Adu08g01240 406 ProSitePatterns Protein kinases ATP-binding region signature. 80 112 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01240 Adu-Chr8 21449733 21452741 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g01240 60 356 Glycoside Hydrolase AT3G07070 50.000 4.06e-102 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Adu08g01240 PK_Tyr_Ser-Thr 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01240 - - adu:107461650 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01240 08 21449733 21452741 Adu03g00279 03 2562455 2565197 PCT