Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01219 ATGAATCGATTCCAAAGTATTAATGTGGTGTCGCGTCTTGCTGATTCTGTCACCAGTGGCATGGCAGCAATATTCCTTCACCGGCTATGCCTCGGTGCATGGTCAGATCATGGTGAAAGGACTGGGGGTTTTTATGATTGCAATCGATATGAGGCAGCAAAACAAGAGGGAGTGTATGATGAAACTGAAAGAAGAAGAGAAATGGCAAAGAATTCATTGGAGAGGTACACGCATTATTATGAGCGATGGGCCAGCAGTCAATCCTCGAGGCAAAAAGCTCTTGCAGATCTACACCAGATGCAAACTGTTCATATTGAAAAACTTAGTGATACACAATGCCAGCCGGAGTCACAGCTTAAGTTCATAACTGAGGCCTGGCTACAGATAGTTGAATGCGGACGGGTGCTGAAGTGGACGTATGCATATGGATATTACTTGCCTGAGCATGAACATGCTAAAAAACAGTTTTTTGAGTACTTGCAAGGTGAGGCAGAATCTGAATTCAATGACTTCCGCACAAAACTAGCTGGATTAACCAGTGTAACTAGAAACTACTTTGAGAATTTGGTTAGGGCTTTAGAGAATGGTTTATCTGATGTGGATAGTAATGGAGCTGCTTCAAGCAAAGCGACAAGCTCTAAAAATGCAGCAGGGAGCAGCAAGGGGAGAGGTGGAAGAGGAAAGGGAACTCTTCGGGCAAGCATGGCTAGTAGTAGAATGACCGACGATAATCATTGGTCCTGTGAGCAATGTACCTATGCAAATGCGAAATCTGCCACCACGTGCCAGATCTGCAACCAACAGCGCCGATGA 813 0.449 MNRFQSINVVSRLADSVTSGMAAIFLHRLCLGAWSDHGERTGGFYDCNRYEAAKQEGVYDETERRREMAKNSLERYTHYYERWASSQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECGRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGAASSKATSSKNAAGSSKGRGGRGKGTLRASMASSRMTDDNHWSCEQCTYANAKSATTCQICNQQRR 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01219 270 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 28 168 IPR031127 GO:0004842|GO:0016567
Adu08g01219 270 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 170 218 - -
Adu08g01219 270 SMART zf_4 244 268 IPR001876 -
Adu08g01219 270 MobiDBLite consensus disorder prediction 201 219 - -
Adu08g01219 270 MobiDBLite consensus disorder prediction 201 238 - -
Adu08g01219 270 Gene3D - 240 270 - -
Adu08g01219 270 ProSitePatterns Zinc finger RanBP2-type signature. 246 265 IPR001876 -
Adu08g01219 270 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 28 168 - -
Adu08g01219 270 Gene3D - 28 201 - -
Adu08g01219 270 ProSiteProfiles Zinc finger RanBP2 type profile. 242 270 IPR001876 -
Adu08g01219 270 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 170 218 IPR031127 GO:0004842|GO:0016567
Adu08g01219 270 Pfam Ariadne domain 60 153 IPR045840 -
Adu08g01219 270 SUPERFAMILY Ran binding protein zinc finger-like 242 269 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01219 Adu-Chr8 21310115 21312590 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g01219 29 269 ARIADNE family AT1G65430 63.774 4.08e-114 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01219 K11968 - gmx:100810427 419.468