Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01177 ATGACAAATAATCCTTACTACTTGAACAACAATGGTTATTGGTTCGACCTTAATTCTCCAAGCAGCACCTATGTTTTTGGTTCCAATCACGAGTCTCCACCGAGAAGAGAAGCGCTTCCTCTCCTGAATAAGCTAAGCCCTAGCAGGAGTACGAGTAGTAGGCCTCAAGATCTGGAATCTTCGTTTGGTGCCATGGAAGTGAAGGAGAAGCACAAGAGAGGAGATGACGGCGATGAGAGTGTGACGGTGGCTTTGCACTTAGGGCTTCCAGAAACAAGAAGTAAGAATATGACATGCGAAGAAGAAGTTTCAGCAGCGTCAGTGTCACAAGAACAAGAAGAAGGAGGAGGAGGAGGAAGAGGTTCTGATTCGAATTCGATGAATCGAGGTCAATATTGGATCCCAACACCGGCTCAGATTCTGATTGGTCCAACACAGTTCTCTTGCCCCCTTTGTTTCAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAATATAGGAAGGGGCCAGAATCACTAAGGGGAACACAACCAACAGCAATGCTTAGGCTTCCATGCTACTGCTGTGCACCAGGGTGTAAGAACAACATTGATCATCCAAGAGCCAAGCCTCTCAAAGATTTCAGAACCCTCCAAACACACTACAAGAGGAAGCATGGAATCAAGCCTTTCATGTGCAGGAAGTGTTGCAAGGCCTTTGCTGTGAGAGGTGATTGGAGGACTCATGAGAAGAACTGTGGCAAGCTTTGGTATTGTTCTTGTGGCTCTGATTTCAAGCATAAGAGGTCTCTCAAGGATCATATCAAGGCCTTTGGGAATGGTCACAAGGCTTATGGCATTGATTCTCTTGATCAAGATGATAATGAACCTGGCTCTGAAATTGACCAAGAAAATGATCATCTTTCTAATTCTACTACTCATCATCATCATACTTGA 957 0.4483 MTNNPYYLNNNGYWFDLNSPSSTYVFGSNHESPPRREALPLLNKLSPSRSTSSRPQDLESSFGAMEVKEKHKRGDDGDESVTVALHLGLPETRSKNMTCEEEVSAASVSQEQEEGGGGGRGSDSNSMNRGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGNGHKAYGIDSLDQDDNEPGSEIDQENDHLSNSTTHHHHT 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01177 318 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 18 306 - -
Adu08g01177 318 MobiDBLite consensus disorder prediction 92 130 - -
Adu08g01177 318 MobiDBLite consensus disorder prediction 44 59 - -
Adu08g01177 318 Gene3D Classic Zinc Finger 146 169 - -
Adu08g01177 318 Gene3D Classic Zinc Finger 229 306 - -
Adu08g01177 318 MobiDBLite consensus disorder prediction 26 80 - -
Adu08g01177 318 PANTHER ZINC FINGER PROTEIN WIP2 18 306 IPR043584 GO:0003700|GO:0010468
Adu08g01177 318 ProSitePatterns Zinc finger C2H2 type domain signature. 149 169 IPR013087 -
Adu08g01177 318 SUPERFAMILY beta-beta-alpha zinc fingers 213 251 IPR036236 -
Adu08g01177 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 147 174 IPR013087 -
Adu08g01177 318 MobiDBLite consensus disorder prediction 63 80 - -
Adu08g01177 318 MobiDBLite consensus disorder prediction 289 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01177 Adu-Chr8 20758607 20760274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g01177 81 309 C2H2 Transcription Factor Family AT3G57670 69.884 5.50e-129 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu08g01177 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01177 - - gmx:100789416 427.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01177 08 20758607 20760274 Adu08g01177 08 20758607 20760274 ECH
Adu06g00929 06 11381720 11383479 Adu08g01177 08 20758607 20760274 ECH
Adu02g01556 02 65075220 65079133 Adu08g01177 08 20758607 20760274 ECH
Adu08g01177 08 20758607 20760274 Adu03g00338 03 3043625 3045453 PCT