Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01173 ATGAATTCAAACAACTGGCTATCATTCCCACTCTCTCCAACTCATTCATCACTACCACCTCTGGGAACATTGGTGAATGACAACATCGATAACTCCTTTCAAAATCATGATTGGAATCTGATAAACAATGAGAGCAGCAGCAGTAGTCAAGTTCCGAAGGTAGCAGATTTTCTTGGTGTGAGTAACAAGTCTGAGAATGAGTCAGATCTTGCAGGCTTGGATGATGACTCGGATTACTTGTTCAACGCAAACACTACCCTTTTGCCTCTGCAAGTTCTTTCTAATAATAGCAGCTATGACTACCAACAACAACAAGAAGAGAGTAACAACAATAACAGTAGTAATCTTCATCAGTCACTCACACTCTCCATGGCTACTGCCAACAAGGACTCCACTACTTCCGACAACACTTGTGCCACTGCCATCGTTGAAGCTTCAGCCGCTGCCCCGAGAAGAGCTTTGGATACCTTTGGTCAGAGAACTTCTATTTATCGTGGTGTAACAAGACATAGGTGGACTGGAAGGTATGAAGCTCATCTATGGGATAATAGTTGTAGAAGGGAGGGTCAATCAAGAAAAGGTCGCCAAGTGTATTTGGGTGGATACGACAAAGAAGAGAAAGCAGCAAGGGCTTATGATTTAGCCGCACTTAAGTACTGGGGAACTTCCACCACTACCAACTTTCCCATGAGTAACTACGAGAAAGAGTTGGAAGACATGAAGCACATGACAAGACAGGAATTCGTAGCAGCCATTAGAAGGAAGAGCAGTGGATTCTCAAGGGGAGCATCAATGTATCGTGGAGTCACAAGGCATCACCAACATGGAAGATGGCAAGCAAGGATAGGAAGAGTGGCCGGAAACAAAGATCTGTACTTGGGAACTTTCAGTACCGAAGAAGAAGCTGCAGAAGCTTATGACATTGCAGCCATAAAGTTCAGAGGTCTAAACGCAGTTACAAACTTCGACATGAGTCGCTACGATGTGAAAGCCATTCTTGAAAGCAACACACTTCCCATTGGAGGAGGTGCTGCAAAACGCTTAAAGGAAGCTCAGGCTCTAGAATCTTCTAGAAAGACTAATAGAGATGACATCATAGCATTGGGATCCACCTTTCCATACGGATCTTCTTCATCAACCACAACCGCCACCAGATTTTTGCAGCAAGCAACTGCTTATCCTTTAATGCCACAGCACCACTTCGATCATCATCATCATCAACCATTGTTAACGTTACAGAACCATGACATATCACAACATTACAACACTGATCCTGCTTCTTCTTCGTTTCATCATACTAATTCTTATCTCCAAACGCAGCTTCAACTCCATCATCAACAGCATCAAACTACTTCTTCTTCTTCATCTTCATACAATAATAATAATGCTCAATTTTACAGCAGCTACCTTCAGGGATTCATGGACCATAACAATGGGAATGGAGGAGGAGGTTACCATCATCATCATCATAACACTAATAATATGCTTGGGATTGGAATGGGTTCTAATAATAACTCCTCATCGAGCAATGCCACAGCAGTGGGATCAGCGGAGGAGCTTGCTCTTGTGAAGGTTGATTATGACATGCCTTCCGCGGGATACGGCGGCTGGTCGCCGGCAGCAGACACCATGCACGGTTCAAACGGCGGTGGTGTCTTCACAATGTGGAATGAATGA 1677 0.4395 MNSNNWLSFPLSPTHSSLPPLGTLVNDNIDNSFQNHDWNLINNESSSSSQVPKVADFLGVSNKSENESDLAGLDDDSDYLFNANTTLLPLQVLSNNSSYDYQQQQEESNNNNSSNLHQSLTLSMATANKDSTTSDNTCATAIVEASAAAPRRALDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGTSTTTNFPMSNYEKELEDMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKTNRDDIIALGSTFPYGSSSSTTTATRFLQQATAYPLMPQHHFDHHHHQPLLTLQNHDISQHYNTDPASSSFHHTNSYLQTQLQLHHQQHQTTSSSSSSYNNNNAQFYSSYLQGFMDHNNGNGGGGYHHHHHNTNNMLGIGMGSNNNSSSSNATAVGSAEELALVKVDYDMPSAGYGGWSPAADTMHGSNGGGVFTMWNE 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01173 558 ProSiteProfiles AP2/ERF domain profile. 163 229 IPR001471 GO:0003700|GO:0006355
Adu08g01173 558 CDD AP2 162 231 IPR001471 GO:0003700|GO:0006355
Adu08g01173 558 Gene3D AP2/ERF domain 265 325 IPR036955 GO:0003700|GO:0006355
Adu08g01173 558 Gene3D AP2/ERF domain 163 231 IPR036955 GO:0003700|GO:0006355
Adu08g01173 558 ProSiteProfiles AP2/ERF domain profile. 265 323 IPR001471 GO:0003700|GO:0006355
Adu08g01173 558 CDD AP2 264 325 IPR001471 GO:0003700|GO:0006355
Adu08g01173 558 SUPERFAMILY DNA-binding domain 264 325 IPR016177 GO:0003677
Adu08g01173 558 SMART rav1_2 265 329 IPR001471 GO:0003700|GO:0006355
Adu08g01173 558 SMART rav1_2 163 235 IPR001471 GO:0003700|GO:0006355
Adu08g01173 558 Pfam AP2 domain 163 221 IPR001471 GO:0003700|GO:0006355
Adu08g01173 558 Pfam AP2 domain 266 315 IPR001471 GO:0003700|GO:0006355
Adu08g01173 558 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 5 557 - -
Adu08g01173 558 PRINTS Ethylene responsive element binding protein signature 164 175 IPR001471 GO:0003700|GO:0006355
Adu08g01173 558 PRINTS Ethylene responsive element binding protein signature 305 325 IPR001471 GO:0003700|GO:0006355
Adu08g01173 558 SUPERFAMILY DNA-binding domain 162 231 IPR016177 GO:0003677
Adu08g01173 558 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01173 Adu-Chr8 20719745 20722393 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g01173 1 558 AP2-EREBP Transcription Factor Family AT1G51190 59.609 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Adu08g01173 AP2 9.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01173 K09285 - gmx:100788471 619.387