Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01111 ATGATTAATCTCTTAGTACCTGATGAAGATAAAGAAAAGTATGCCCGTTACCTTCTTAGGTCTTATATTGAAGACAACAAGAAGACCAAGTGGTGTCCTGCTCCAGGCTGTGAATATGCTGTCAATTTTGACGCTGGCAGTGGAAATTATGATGTATCTTGCTTCTGTTCATATAGCTTTTGCTGGAATTGCACAGAGGAGGCTCATCGTCCAGTTGATTGTGGCACTGTGTCAAAGTGGATTCTGAAAAATAGTGCAGAATCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGCTATGCTTTGGTGCATGGTCAGATCATGGTGAAAGGACTGGGGGTTTTTATGCTGGCAATCAATATGAGGCAGCAAAACAAGAGTGAGTGTATGATGAAACTGAAAGAAGAGAAATGGCAAAGAATTCATTGGAGGGGTACACGCATTATTATGAGCGATGGGCCAGCAATCAATCCTCGAGGCAAAAAGCTCTTGCAGATCTACACCAGATGCAAACTGTTCATATTGAAAAGCTTAGTGACACAATGCCAGCCTGAGTCACAGCTTAAGTTCATAAGCCTGGCTACAGTTGAATGCCGAAGGGTGCTGAAGTGGACGTATGCATATGGATATTACTTGCCTGAGCATGAACATGCTAAAAAACAGTTTTTTGAGTACTTGCAAGGTGAGGCGGAATCTGGTTTGGAGCGACTTCATCAATGTGCTGAAAAGGAACTACAGTTGTTCCTTAATACTGATGGCCCATCTAAAGAATTCAATGACTTCCGCACAAAACTAGCTGGATTGACCAGTGTAACTAGAAACTACTTTGAGAATTTGGTTAGGGCTTTAGAGAATGGTTTATCTGATGTGGATAGTAATGGAGCTGCTTCAAGCAAAGCGACAAGCTCTAAAAATGCCGCAGGGAGCAGCAAGGGGAGAGGTCGAAGAGGAAAGGGAACTCTTCGGGCGAGCATGGCTAGTAGTAGAATGACCGATGATAATCATTGGTCCTGTGAGCAATGTACCTATGGAAATGTGAAATCTGCCACCATGTGCCAGATCTGCAACCAACAGCGCCGATGA 1089 0.4325 MINLLVPDEDKEKYARYLLRSYIEDNKKTKWCPAPGCEYAVNFDAGSGNYDVSCFCSYSFCWNCTEEAHRPVDCGTVSKWILKNSAESENMNWILANSKPCYALVHGQIMVKGLGVFMLAINMRQQNKSECMMKLKEEKWQRIHWRGTRIIMSDGPAINPRGKKLLQIYTRCKLFILKSLVTQCQPESQLKFISLATVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQLFLNTDGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGAASSKATSSKNAAGSSKGRGRRGKGTLRASMASSRMTDDNHWSCEQCTYGNVKSATMCQICNQQRR 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01111 362 SMART ibrneu5 12 74 IPR002867 -
Adu08g01111 362 SUPERFAMILY RING/U-box 12 81 - -
Adu08g01111 362 MobiDBLite consensus disorder prediction 293 330 - -
Adu08g01111 362 Gene3D - 120 292 - -
Adu08g01111 362 Gene3D - 70 103 - -
Adu08g01111 362 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 167 310 - -
Adu08g01111 362 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 1 102 - -
Adu08g01111 362 MobiDBLite consensus disorder prediction 293 311 - -
Adu08g01111 362 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 167 310 IPR031127 GO:0004842|GO:0016567
Adu08g01111 362 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 1 102 IPR031127 GO:0004842|GO:0016567
Adu08g01111 362 ProSitePatterns Zinc finger RanBP2-type signature. 338 357 IPR001876 -
Adu08g01111 362 ProSiteProfiles Zinc finger RanBP2 type profile. 334 362 IPR001876 -
Adu08g01111 362 SUPERFAMILY Ran binding protein zinc finger-like 334 361 IPR036443 -
Adu08g01111 362 Pfam IBR domain, a half RING-finger domain 12 74 IPR002867 -
Adu08g01111 362 ProSiteProfiles TRIAD supradomain profile. 1 148 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01111 Adu-Chr8 19951381 19954044 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g01111 1 361 ARIADNE family AT1G65430 53.553 1.62e-129 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01111 K11968 - gmx:100810427 482.256