Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01103 ATGGAACCATACCCTTATTCTCCCAAGAGAAGTGGAGCCTCGTATTGGGGATCTTGTAGAGTTCAATTGGAGGGATCAACATCATTAGATGGTGATATGAGCAATTCAATTTCAGATGATATGGCTTGTAGCTTCTCCGGGCTCATGAATTTTGATCCTTATGCCGGCTTGTACAATAGCCCATCGATAACTGATCAGGTTTTCAACAATGGCCTTCCATCATCATATCCGTCTACCCCTGGGTTCAATCTAGAGGAAAACAATAGTAGCCAATTCTTCAGGACAGAAATGAATGGATATTTCAACACTAAACAAGGCTCCCCTGGTTATGGGGAGAAAATTGCGTTTCAACAAATGGACACCTTACTTGGTTTTTTTGATGGCACAGATGATACACATAGTTTAAGTTCTATGCAAAAAATTAATGGCTCTTCTCAACACCTTGATGCCATTGGCAGTTATATCATGTCCAAGCCAGCTAGTTTGTCACTTGATGAGAGAATGTTGAAAGCCTTGTCCGTCTTTAAGGAATCAGCTGGTGGTGGAATATTGGCACAGGTTTGGGTTCCTATAAAGGATGGTGATCAATTCTTCTTGACCACAAGTGAACAGCCTTATTTACTAGACCAAATTCTTGCCGGATATCGTGAAGTGTCAAGAACATACACATTTTCTACTGAAGGAAAACCGGGTTCTCTCCCAGGACTTCCTGGTCGTGTGTTTATGTCCAAAACTCCTGAGTGGACTTCCAACATTGGTTATTACAATAAGAATGAGTACTTGAGGATGGATGATGCGATTAATCATGAGGTTCGTGGATCAATTGGTTTACCCATATCTGATCTGCACTCTGAACTGCCATGTTGTGCTGTACTGGAACTTGTCACTACAAATGAAAAGCCTGATTTTGAGAAGGAAATGGATATTGTTTGTCATGCACTACAGAATGTAGATCTAACGGCTAATATGCCTCCTCGACTTCTTCCTCAGTGTCTTTCAAACAGCAAACGTGCTGCTTTGACGGCCATAGTTGATGTCTTACGATCCGTTTGTCATGCGCATAGATTGCCAATAGCACTGACATGGATTCCTTGTTGTGTCGCTGAAGACGCAGAAGGTAAAGATACAAAGATACACATTAAAGAGGGTCATTCGAGTCCTCGTGAAAAGAACATACTATGCGTTGAAGAATCAGCATGCTATGTAACTGATAAAGCAATGGAAGGATTTGTTCATGCTTGCATTGAACACCATCTTCAGGAAGGGAAAGGTATAGCTGGGAGAGCTCATCAATCAAATCATCCTTTCTTTTGTCCTGATGTGAAGGCCTATAATATTAGTGAATATCCACTTGTTCATCATGCGCGCAAGTACAATCTGAATGCTGCAGTTGCAATTAGGCTGAGGAGTACTTATACTAATGATGATGATTACATACTGGAATTCTTTTTGCCTGTAAACATGAAAGGGAGCTCAGAACAGCAACTTCTCTTAGACAACCTCTCAGGTACCATGCAGAAAGTTTGTAGGAATTTAAGAACAGTTTCAGATGAGGAATTATCAAGAATGAAAGGCTCACATGTAGGATTTAAAAACAAAAATGTCCCTAGAATTTTTCCTATGTCCAGGAGAAACTCCCAAATACCATTAACAAACAGTAACCATGATTCGGTCCGTAAGATGTCCATCAAGGCATCTAACCAAGGAAACAATGGAATTGAGTCTTCTCATAACCAGGAAAGAAATGGATCAAGAAGGATGGTTGAGACAAAGAGACCAGCTGAGAAGAAAGTTAGTTTGAGTGTTCTTCAGCAACACTTCTCCGGTACTCTGAAGGATGCTGCTAGGAGCATTGGTGTTTGCCCGACAACTCTGAAAAGGATATGCAGGAAACAAGGGATTTCGAGATGGCCATCCCGCAAGATCAAGAAAGTGAACCGATCGTTAAAGAAAATACAGACCGTGCTCGACACTGTCGAAGGACTGGAAGGAGGGTTGAAGTTTGATCCCTGTCTAGGGGCACTTGTATCAAGAGAAGGAGAATCAATCATCCAAGAAATTGATGCACACGATACTCTTTTGCACCCTGAGAATGTTACTGCAAAAGAAAAATGGGTTCTGAACAAGGGTGGTTCAAGAGAAGACAAATCGAAACATTCAAGTATCTTGGTTAATAGGGATGATGATGGAGCTGTTGAACATAACCACCCTTCTTCTTCAGGCTTTACAAACTCATCTAATGATTCTGGTTCAAACCAGAGGCAGAACTTGAAAGGCAAATCAACCTTTGCCGATAAAACTGGGTTGAAACTTCAAGCCAAAGCTACCTATGGCGAAGACACTGTTCGTTTCAAGTTTGATCCATCCTGGGGTTGTTTGAAGCTATATGAAGAAGTTGCAACAAGGTTCAAATTACAAAATGGGTCGTTTCAACTCAAATATCTAGATAATGAACAAGAGTTGGTGAGGTTGTTAGATGACTCAGATTTGCAGGAGTGTATGGAAATATTGGATGAAGTTGGGAAAAGTTGTGTCAGGTTTGTTGTTCGCGACATACCATGCAATTTAAGCAGCCCCAGCTGCAGTAGTTGCTACCTAGGATGTGACTCATAG 2613 0.4122 MEPYPYSPKRSGASYWGSCRVQLEGSTSLDGDMSNSISDDMACSFSGLMNFDPYAGLYNSPSITDQVFNNGLPSSYPSTPGFNLEENNSSQFFRTEMNGYFNTKQGSPGYGEKIAFQQMDTLLGFFDGTDDTHSLSSMQKINGSSQHLDAIGSYIMSKPASLSLDERMLKALSVFKESAGGGILAQVWVPIKDGDQFFLTTSEQPYLLDQILAGYREVSRTYTFSTEGKPGSLPGLPGRVFMSKTPEWTSNIGYYNKNEYLRMDDAINHEVRGSIGLPISDLHSELPCCAVLELVTTNEKPDFEKEMDIVCHALQNVDLTANMPPRLLPQCLSNSKRAALTAIVDVLRSVCHAHRLPIALTWIPCCVAEDAEGKDTKIHIKEGHSSPREKNILCVEESACYVTDKAMEGFVHACIEHHLQEGKGIAGRAHQSNHPFFCPDVKAYNISEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPVNMKGSSEQQLLLDNLSGTMQKVCRNLRTVSDEELSRMKGSHVGFKNKNVPRIFPMSRRNSQIPLTNSNHDSVRKMSIKASNQGNNGIESSHNQERNGSRRMVETKRPAEKKVSLSVLQQHFSGTLKDAARSIGVCPTTLKRICRKQGISRWPSRKIKKVNRSLKKIQTVLDTVEGLEGGLKFDPCLGALVSREGESIIQEIDAHDTLLHPENVTAKEKWVLNKGGSREDKSKHSSILVNRDDDGAVEHNHPSSSGFTNSSNDSGSNQRQNLKGKSTFADKTGLKLQAKATYGEDTVRFKFDPSWGCLKLYEEVATRFKLQNGSFQLKYLDNEQELVRLLDDSDLQECMEILDEVGKSCVRFVVRDIPCNLSSPSCSSCYLGCDS 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01103 870 ProSiteProfiles PB1 domain profile. 770 852 IPR000270 GO:0005515
Adu08g01103 870 MobiDBLite consensus disorder prediction 579 595 - -
Adu08g01103 870 SUPERFAMILY CAD & PB1 domains 771 854 - -
Adu08g01103 870 Gene3D - 769 853 - -
Adu08g01103 870 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 6 703 - -
Adu08g01103 870 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 728 867 - -
Adu08g01103 870 PANTHER PROTEIN NLP8 728 867 IPR045012 GO:0003700
Adu08g01103 870 PANTHER PROTEIN NLP8 6 703 IPR045012 GO:0003700
Adu08g01103 870 Pfam PB1 domain 773 851 IPR000270 GO:0005515
Adu08g01103 870 ProSiteProfiles RWP-RK domain profile. 580 665 IPR003035 -
Adu08g01103 870 Pfam RWP-RK domain 598 645 IPR003035 -
Adu08g01103 870 MobiDBLite consensus disorder prediction 727 759 - -
Adu08g01103 870 MobiDBLite consensus disorder prediction 736 759 - -
Adu08g01103 870 MobiDBLite consensus disorder prediction 565 595 - -
Adu08g01103 870 SMART PB1_new 770 852 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01103 Adu-Chr8 19863456 19867456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g01103 771 867 NLP Transcription Factor Family AT2G43500 62.887 4.90e-30 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Adu08g01103 PB1 3.2e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01103 - - aip:107613413 1721.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01103 08 19863456 19867456 Adu08g01103 08 19863456 19867456 ECH
Adu08g01103 08 19863456 19867456 Adu03g00398 03 3653460 3666693 PCT