Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01096 ATGAAGTGCATGTGTGAAAAAGAATCTGCTCTATGTTCTGTTCATGCAACACCAGCCTATGTTCTTGGATGCTCATCATCATGGGGTAATTCTCCTGAATCTGATGTTGTCCAACAATCATCCATGTCTGATAAATTGAACTTAAACATGGGTGTTGTTCTGCCACAACAATGTCACAAGAGTAGGCCACTAAATCTCCAATTTCAAGAGCAGGATTCATCTTCAACTCTTTCCACCAATCAATCTGGTCAAATTTCTATCCAGCATAGCAATTCTTCAGCTTGTTCATCATCACTTAGCAGAAATATGGAGAAGAGTGCTGGAAATCAAATCAGTTCTTCAATGGGGATTCTTGATTTTTCCTTCCCTCCTTCGGAACTCGATCGCGGCCAATCAACTGCTCCAATTGCATTTCATTGTGCATATCCATGCTATGGTGGCATACTAGCTGCTGCATATGACCAACACTCTAAGGTAATTGGAAGTGCAGCAGTTCGGATTCCTCTGCCACTTGATCTGAGAGAAGAACCTATATATGTGAATTCAAAGCAGTATCATGCTATACTGAGACGTAGACAGTACCGAGCTAAACTCGAAGCACATAACAAACTCATCAGAGATCGCAAACCTTATCTTCACGAGTCTCGCCATCTACATGCACTCAAGAGAGCTAGAGGTGCTGGTGGACGCTTTCTCAACACTAAGAACCTCGTCCAATCAAAGGTTACTTCTACCACCACCACTTCCTACCAGGCTTACATTGGAAGGGATATCCAGGACTATACGGCAGATACCGGTGGCGCCGCCAGTCACCGCCGTCTGTCTGTTCTTATGTGA 837 0.4385 MKCMCEKESALCSVHATPAYVLGCSSSWGNSPESDVVQQSSMSDKLNLNMGVVLPQQCHKSRPLNLQFQEQDSSSTLSTNQSGQISIQHSNSSACSSSLSRNMEKSAGNQISSSMGILDFSFPPSELDRGQSTAPIAFHCAYPCYGGILAAAYDQHSKVIGSAAVRIPLPLDLREEPIYVNSKQYHAILRRRQYRAKLEAHNKLIRDRKPYLHESRHLHALKRARGAGGRFLNTKNLVQSKVTSTTTTSYQAYIGRDIQDYTADTGGAASHRRLSVLM 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01096 278 ProSitePatterns NF-YA/HAP2 subunit signature. 179 199 IPR018362 GO:0003677|GO:0016602
Adu08g01096 278 PRINTS CCAAT-binding transcription factor subunit B signature 177 199 IPR001289 GO:0003700|GO:0006355
Adu08g01096 278 PRINTS CCAAT-binding transcription factor subunit B signature 208 231 IPR001289 GO:0003700|GO:0006355
Adu08g01096 278 SMART cbf3 173 234 IPR001289 GO:0003700|GO:0006355
Adu08g01096 278 MobiDBLite consensus disorder prediction 70 99 - -
Adu08g01096 278 ProSiteProfiles NF-YA/HAP2 family profile. 174 234 IPR001289 GO:0003700|GO:0006355
Adu08g01096 278 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 35 251 IPR001289 GO:0003700|GO:0006355
Adu08g01096 278 Gene3D - 174 236 - -
Adu08g01096 278 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 231 IPR001289 GO:0003700|GO:0006355
Adu08g01096 278 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 35 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01096 Adu-Chr8 19823620 19826087 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g01096 4 240 CCAAT-HAP2 Transcription Factor Family AT1G17590 43.254 1.69e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Adu08g01096 CBFB_NFYA 1.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01096 K08064 - gmx:100803893 261.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01096 08 19823620 19826087 Adu08g01096 08 19823620 19826087 ECH
Adu03g00454 03 4122738 4126456 Adu08g01096 08 19823620 19826087 PCT