Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01082 ATGGGATTACAAGAAAATCTTCTGAGAGGCATATATGCTTATGGTTTTGAGAGGCCTTCTGCAATACAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGTTTAGATGTGATTCAGCAGGCTCAATCTGGAACTGGCAAGACAGCAACATTCTGTTCTGGAATTTTGCAGCAGCTTGATTATGGAGTGGTTCAGTGTCAGGCTTTGGTTTTGGCACCAACAAGGGAGCTGGCACAGCAAATTGAGAAGGTTATGCGAGCACTTGGTGATTACCTTGGTGTCAAGGTTCATGCTTGTGTTGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTCCAGGCTGGTGTCCACACTGTTGTTGGCACTCCCGGCCGTGTTTTTGACATGCTGCGGAGACAGTCTCTTCGCCCAGATTACATAAAGATGTTTGTTTTGGATGAGGCAGATGAAATGCTTTCTCGTGGTTTCAAAGACCAGATCTATGACATCTTCCAGCTTCTACCATCTAAAATTCAGGTTGGAGTGTTTTCTGCTACCATGCCACCAGAAGCCCTTGAGATTACAAGGAAGTTCATGAATAAGCCAGTGAGAATCTTGGTTAAGCGAGATGAATTGACCCTTGAAGGTATCAAGCAGTTTTATGTGAATGTTGAGAAGGAAGACTGGAAGCTAGAGACGCTCTGCGACCTTTATGAGACTCTGGCCATCACACAGAGTGTCATCTTTGTGAACACAAGGCGCAAGGTGGATTGGCTCACTGATAAGATGAGAAGCAACGATCACACCGTTTCGGCCACACACGGCGACATGGATCAAAACACTCGTGACATCATTATGCGCGAATTCCGGTCAGGCTCATCGCGAGTTCTCATCACCACTGATTTATTGGCTAGAGGCATAGATGTGCAGCAAGTGTCTCTGGTTATAAACTATGATCTGCCAACTCAACCAGAGAACTATCTTCACCGCATAGGAAGGAGTGGAAGGTTTGGAAGGAAAGGTGTTGCTATAAACTTTGTGACTTTGGATGATGCAAGGATGCTTTCTGATATTCAGAAGTTCTACAATGTCAGTGTAGAAGAGTTGCCATCAAATGTTGCTGATCTCCTCTGA 1110 0.4541 MGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGVVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHTVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDARMLSDIQKFYNVSVEELPSNVADLL 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01082 369 Pfam Helicase conserved C-terminal domain 222 330 IPR001650 -
Adu08g01082 369 Gene3D - 1 204 IPR027417 -
Adu08g01082 369 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 350 IPR027417 -
Adu08g01082 369 SMART ultradead3 15 212 IPR014001 -
Adu08g01082 369 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 208 369 IPR001650 -
Adu08g01082 369 Gene3D - 205 369 IPR027417 -
Adu08g01082 369 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 1 24 IPR014014 GO:0003724
Adu08g01082 369 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 1 369 - -
Adu08g01082 369 PANTHER RNA HELICASE 1 369 - -
Adu08g01082 369 CDD SF2_C_DEAD 209 339 - -
Adu08g01082 369 Pfam DEAD/DEAH box helicase 21 182 IPR011545 GO:0003676|GO:0005524
Adu08g01082 369 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 27 197 IPR014001 -
Adu08g01082 369 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 143 151 IPR000629 -
Adu08g01082 369 CDD DEADc_EIF4A 1 198 - -
Adu08g01082 369 SMART helicmild6 249 330 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01082 Adu-Chr8 19589375 19591051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g01082 1 369 Eukaryotic Initiation Factors Gene Family AT1G72730 91.870 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01082 K03257 - gmx:100777628 721.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01082 08 19589375 19591051 Adu09g00558 09 7069707 7073379 PCT