Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01022 ATGGGTCAAGAATTTTCTCATGAAGGGGTTAATAGCGAGCATACATCATATGATCAGTATGAGCAGGAGGAAGAAAAATATGAGGAAGTTGACGTGGATTATATGGATGAGGACGACACAAGTGTAGAACCAATGATTGAATTTTGGAACATCAGGGATGAAGATGTATGTCATTTTCACTTTTCTGATGTCGACATTACATTTGAGTTCTACAATAGATATGCAAGGACAAGAGGCTTTAGTGCTCGGAAGAACAGGAGTAGGAAGAGTCGTGCGGGCGCACTTAAGTTGAAGAATTTTGTATGTCATCGTGAAGGATTTAGACCGCAAAATAATTATGGCATTGAAAAATTCAAGAAAAAACCTACACCTGAGACAAGGTGTGGCTGTAGTGCAATAATGGAGATTCGTCTAGATGCACCTAATGGTCGTTGGTGGAAAGAGGTCCAGGCTGACCTCGCCTCTGTGAATGGGAGACCCAGTTTGCAAACCTGTTTTCAACAGTTAGAGAGGAGTGCTGCCAATGTTTACACCCTATCAATATTTCATATGTTCCAACCAATCCTTGTACGGGCTGCATCAATGAAGGTAATAAATATGAGGCAAACTGGCTCTTATGTGATTTACTCTGTCGCTTTAGACCGAATGCCAAATGAGATGTGGCGTGTATTCTGTTGTGACATTGAGATGGAATTCAATTGTTCATGTATGAGAATGGAATCATTTGGCATACCTTGTGAACACATAATTTGCGTCTTGGTGCATGAAGATATAGAGGAGTTGCCAAGGTCATTAGTCTTGCCTCGGTGGACCAAGACTGCCAAAGTGGGTTTGCAAAATGCGGTCGGGCTTCATTGGGATTCTTTGATGCTAAGTCAATACGGTTGTTTGATGGATTGGTTTAGACAACTAGCCAACTTTGCTTGTCGAGATAACGAGAGATTTATCTTTACACGGGAAATGGCTATGAATTTGTTGAAACAATTTAAGGAGGAAGATGCTGCACAAAAAGAGTTGGTCAATGATGCAGATAGTGTAAGAGATGGTGTGCAAGTGGATAATTCTGGAGCTGGGCTTGCAACCAATGATCTCGGACATAGCATGCCAAGGGACCCAAGAAAATGTAGGACAAAAGGGGGGGCTTCACAGTCCAATAAAAGAAAACATCGATGTGGACAGTGTGGCATGGAGGGCCACAATCGAACAACTTGTCGTGTTCGTCGTGGCATCTCACAGTCAGAAGGCCGGGGAAATGACACATTTGATAATGACTCGGATGATCACATGAACATTGAAGATGACTCATTGGTATATGATGAGAATGCTTCGTACAGTAGCAATGAAGTGCTGTTCTTCTTAGAGGCCATAAGAATGGACGAGAGGCTGTCAAGTACTTTGGACCAGCACCTGGTGTGCCCCATAGTCACACCAAGCCCTATGTTCGTTCAAAAGGATGGAAATTTGCGCGTGCTAGAGGAAGAAGGACTAGCAAAGGCTTCAGAGTTTCAGTTCTAG 1515 0.429 MGQEFSHEGVNSEHTSYDQYEQEEEKYEEVDVDYMDEDDTSVEPMIEFWNIRDEDVCHFHFSDVDITFEFYNRYARTRGFSARKNRSRKSRAGALKLKNFVCHREGFRPQNNYGIEKFKKKPTPETRCGCSAIMEIRLDAPNGRWWKEVQADLASVNGRPSLQTCFQQLERSAANVYTLSIFHMFQPILVRAASMKVINMRQTGSYVIYSVALDRMPNEMWRVFCCDIEMEFNCSCMRMESFGIPCEHIICVLVHEDIEELPRSLVLPRWTKTAKVGLQNAVGLHWDSLMLSQYGCLMDWFRQLANFACRDNERFIFTREMAMNLLKQFKEEDAAQKELVNDADSVRDGVQVDNSGAGLATNDLGHSMPRDPRKCRTKGGASQSNKRKHRCGQCGMEGHNRTTCRVRRGISQSEGRGNDTFDNDSDDHMNIEDDSLVYDENASYSSNEVLFFLEAIRMDERLSSTLDQHLVCPIVTPSPMFVQKDGNLRVLEEEGLAKASEFQF 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01022 504 Pfam FAR1 DNA-binding domain 69 145 IPR004330 -
Adu08g01022 504 MobiDBLite consensus disorder prediction 408 430 - -
Adu08g01022 504 ProSiteProfiles Zinc finger SWIM-type profile. 209 257 IPR007527 GO:0008270
Adu08g01022 504 PANTHER OS03G0181600 PROTEIN 143 337 - -
Adu08g01022 504 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 143 337 IPR031052 GO:0006355
Adu08g01022 504 MobiDBLite consensus disorder prediction 1 16 - -
Adu08g01022 504 MobiDBLite consensus disorder prediction 1 23 - -
Adu08g01022 504 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 60 144 IPR031052 GO:0006355
Adu08g01022 504 PANTHER OS03G0181600 PROTEIN 60 144 - -
Adu08g01022 504 SMART 26again6 232 259 IPR006564 GO:0008270
Adu08g01022 504 MobiDBLite consensus disorder prediction 355 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01022 Adu-Chr8 18388863 18392155 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Adu08g01022 FAR1 4.8e-15 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01022 - - ahf:112723376 607.446