Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01006 ATGGGGAGAGTGAAGGTTCCCATAAAAAAAATTGAGAACATAACAAACAGGCAAATTACATTTTTTAAGAGAAAGAATGGTCTCATTAAGAAAGCTTACGAGCTTTTTGTTCTTTGTGATGTTGATGTTGTTCTCATCACGTTCTCTCCTTCTGGCAGACCAGCTCTCTTCTCTTCCAACACAAGGTTTAATTTCTCCACACTACAAACATTCATTTATTTTTACGGAAACATGCAGAGGATGATTAATAAATTGAAAATTGAAGCAGAACAAATATGCCAAACTGATCATTCTGTGTCATGTGTTATTCAGAAAATTCAAAAAGAATTATATATTTGCAAGTCTCAGTTAGAAGAAATGGAGAAACGACTAAGGATATTTGAAGGTGATCCACGTGAGATCACTACACTTTGTGAGGCTGAATATCGCCAGCATATTCTTCAGCAAACTCTAGAGCAAGTGCAGTTAAGAAAGGTGGATCTTGCAAACACGGTAGATGTAGATGAATTATTTGTTGGAGGGACATCAAATAATCCAGTAGAGTGGCTCCCACAGAAAGATGCAAACGTTGATATTCTGAACTTTGTTGATGCCTATGCTCCTGCTTCTCTTGTGGATCAACAATCACATAGTGCTGTTGTTGACATGTTAGGCACAAGTTCTACCCTTGTTCCTTATACAAACACCCTTCAACTTCAAATGAATCCAGAGAATAATAGTTCAGAAGTCTGCACACTATCTCCTGAGTTTGGACAAGTTATAGATATCGATGGTTCTTCTTGGGAGCAACTTTATGATTTAGGGAACCGATCTTTGTCAATAGCAGAGGCAAGGGAGGAAGAACAATATCTGAGTTTCCTTCTTCAGACATCTTAA 876 0.3756 MGRVKVPIKKIENITNRQITFFKRKNGLIKKAYELFVLCDVDVVLITFSPSGRPALFSSNTRFNFSTLQTFIYFYGNMQRMINKLKIEAEQICQTDHSVSCVIQKIQKELYICKSQLEEMEKRLRIFEGDPREITTLCEAEYRQHILQQTLEQVQLRKVDLANTVDVDELFVGGTSNNPVEWLPQKDANVDILNFVDAYAPASLVDQQSHSAVVDMLGTSSTLVPYTNTLQLQMNPENNSSEVCTLSPEFGQVIDIDGSSWEQLYDLGNRSLSIAEAREEEQYLSFLLQTS 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01006 291 SUPERFAMILY SRF-like 2 69 IPR036879 GO:0003677|GO:0046983
Adu08g01006 291 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Adu08g01006 291 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Adu08g01006 291 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Adu08g01006 291 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Adu08g01006 291 PANTHER MADS BOX PROTEIN 1 262 - -
Adu08g01006 291 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Adu08g01006 291 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Adu08g01006 291 Coils Coil 103 123 - -
Adu08g01006 291 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 262 - -
Adu08g01006 291 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01006 Adu-Chr8 18066418 18069331 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g01006 1 189 Type I MADS-box Gene Family AT1G22130 37.220 1.24e-31 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Adu08g01006 SRF-TF 2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01006 - - adu:107461111 474.552