Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01005 ATGGGGAGAGTGAAGGTTCCCATAAAAAAGATTGAGAACATAACAAACAGGCAAATTATATTTTCTAAGAGAAAGAATGGTCTCATTAAGAAAGCTTACGAGCTTTCTGTTCTCTGTGATGTTGATGTTGTTCTCATCACGTTCTCTCCTTCTGGCAGACCAGCTCTCTTCTCTTCCAACACAAGCCCGGTTAATTCAGATTTCCAGCTTGAGAAAATTCAAAAAGAATTATATATTTGCAAGTCTCAGTTAGAAGAAATGGAGAAACGACTAAGAAAAGAAATAAAGCATAGCATGGCCACCATTGAATTGGTTCTCACAAATTTTTTAGGATATTTGAAGGTGATCCATGTGAGATCACTACACTTTTTTGAGGCTGAATATCGCCAGCATATTCTTCAGCAAACTCTAGAGCAAGTGCAGTTAAGAAAGTGTGTCTTGGAGGAAGAGTTTAATTTTGGTGTATCTAATCAACAGGTGGATCTTGCAAACACGGTAGATGTAGATGGATTATTTTTTGGCGGGACATCAAATAATTCAATAGAGTGGCTCCCAGAGGAAGATCCAAATGTTGATATTCTCAACTTTGTAGATGCCTATACTCCTGCTCCTCTTTGGGATCAACAATCACATAGTGCTGTTGTTGACATGTTAAGCACAAGTTCTACCCTTGTGCCTTATACAAACACCCTTCAACTTCAAATGAATCCAGAGAATAATAGTTTAGAAGTCTGCACACTATCTCCTAAGTTTGGACAAGTTATAGATATCAATGGTTCCTCTTGGGAGCAACTCTATGATTTAGGGAATGGATCTTTGTCAATAGCAGAGGCAAGGGAGCAAGAACAACTAATTGAACAATATCTGTCTCAGTTTTCTTCTTTAGACATCTTAATATCCGATCAACATCATCAAATATGA 921 0.3757 MGRVKVPIKKIENITNRQIIFSKRKNGLIKKAYELSVLCDVDVVLITFSPSGRPALFSSNTSPVNSDFQLEKIQKELYICKSQLEEMEKRLRKEIKHSMATIELVLTNFLGYLKVIHVRSLHFFEAEYRQHILQQTLEQVQLRKCVLEEEFNFGVSNQQVDLANTVDVDGLFFGGTSNNSIEWLPEEDPNVDILNFVDAYTPAPLWDQQSHSAVVDMLSTSSTLVPYTNTLQLQMNPENNSLEVCTLSPKFGQVIDINGSSWEQLYDLGNGSLSIAEAREQEQLIEQYLSQFSSLDILISDQHHQI 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01005 306 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 ISOFORM X1 61 279 - -
Adu08g01005 306 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Adu08g01005 306 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Adu08g01005 306 SUPERFAMILY SRF-like 2 64 IPR036879 GO:0003677|GO:0046983
Adu08g01005 306 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Adu08g01005 306 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 ISOFORM X1 1 63 - -
Adu08g01005 306 Coils Coil 70 90 - -
Adu08g01005 306 PANTHER SERUM RESPONSE FACTOR HOMOLOG 61 279 - -
Adu08g01005 306 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 63 - -
Adu08g01005 306 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Adu08g01005 306 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Adu08g01005 306 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Adu08g01005 306 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01005 Adu-Chr8 18059425 18062258 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g01005 1 61 Type I MADS-box Gene Family AT1G22130 72.131 1.22e-24 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Adu08g01005 SRF-TF 3.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01005 - - adu:107461168 377.096