Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00961 ATGCCTACTCCTCCTCCTCTGAAGGTGTTGATTGAAGAGATGGAGTCATCAATGGAAGATGTTCCTTCGGTTTTCATCTGTCCCATCTCGCTGGAGCCAATGAGAGACCCAGTCACACTCTGCACCGGCCAAACCTACGACAGGTCCAACATCCTCAAATGGTTGTCCCTCGGCCACAACACTTGTCCTACCACCATGCAACACCTTTGGGACCTCTCCCTCACCCCCAACACCACCCTCCACCGCTTCATCCTCACATGGTTCTCTCACAACTACTTCTCCATCAAGAAAAGCCTCCAAGACGTTCAACGCACAGCCTTTCACCTCTTGGAATCACTCAACAAGGTTAAGGGTCAAGCAAGAGTTAAATCCCTCAAGGAACTTCGCCACCTCCTTCATTCTCACGCTTCAATAAGGAAGACAGTTGTGGAACACAACGGACTTGCCTTGGTTTCTTCATTGTTAGGTCCTTTCACTTCCCATGCTGTTGGGTCAGAAGCCGTTGGGATACTCGTGAAGCTGGACTTGAGTTCAGAGGTTAAGAAGAATCTGATGCATCCATCAAAAGTGTCGTTATTGGTGGATATCATGAACGAGGGAACCGTTGAAACAAAGATGAACTGTGCAAAGTTGATTGAGATATTGTTGTTAGAAGGACACGTGTCAAGCTTGAGTCTGTTGGTGGGTTTGTTGAGGTTAGTTAGAGACAAGAAACACCCAACTGGGGTGGTCTTGAACGGCCTCATGCTGATCAAGATGATGTGCAGTTCCCAAGAATCAGTTAGAACTTCCATTGTGAGAATCGGAGCGGTGCCGCAGCTGGTGGATCTATTGCCAACACTAAACGATGAGTGCTTGGAAATAGCGCTGTTTATTCTGGAGGTGGTGTCGACGATTCCAGAAGGAAGAATGGCGTTGAGAGATTGTCCCAATGTTGTGATTAATTTGGTGAAGTTGTTGATGAGAGTCTCTGAGAGGTGCAAGCTATTTGCGCTTTCGATATTGTGGGCTATTTACAAGCTTGCGCCGGAACAATGTGCCTCCGAGGCGGTGGAGGCTGGGTTGGCGGCGAAGCTGCTTCTGGTGATTCAAAGCGGTTGCAACCCTGTTTTAAAGCACATGTCTGCTGAGTTCTTGAAATTGTGCAGTTTGAATTACTCTGCTAGTATCTTCATCTCTAAGTCAAACCCTAGCCTCCCGCAGAACTTGTCGTCGTCAGCGGGAGTGGTCAACTGCACCCGCCGTTCGTCGCACCCAAGGAATTCCGCTGTGGTGCTCTTATGCCTATCCCTGTATCGTCCGCGTCTGCTGCTCGCCTATCGGACCTGTGCTAGGCAGCTCGCGGATCCGTTAGGCAGTGAGTGGTCTGCATGGTGGTTCCTGCACGCAGTCCGTGCCTGTACTTGTCGATTCTGCCTGCAAGTGTCACCCGAGTGTCGTCGCAGTTATTGGGTTCTCGTGTTTCGGCTTTCTTGTCGCCGCTGGCAGAAGGAAGTCGCGGAAAATCCTGATTGCTTGCGTTTGGAGGGGAGGTCGCGGCGTCGCAGTCGCCCGTTGGTTGAATTTGTTGCTTCCCAATTAGAGAACCAGAACTTAATGCTCAGTCAGTGTTTGCTTGATTGGCGTTGA 1629 0.5003 MPTPPPLKVLIEEMESSMEDVPSVFICPISLEPMRDPVTLCTGQTYDRSNILKWLSLGHNTCPTTMQHLWDLSLTPNTTLHRFILTWFSHNYFSIKKSLQDVQRTAFHLLESLNKVKGQARVKSLKELRHLLHSHASIRKTVVEHNGLALVSSLLGPFTSHAVGSEAVGILVKLDLSSEVKKNLMHPSKVSLLVDIMNEGTVETKMNCAKLIEILLLEGHVSSLSLLVGLLRLVRDKKHPTGVVLNGLMLIKMMCSSQESVRTSIVRIGAVPQLVDLLPTLNDECLEIALFILEVVSTIPEGRMALRDCPNVVINLVKLLMRVSERCKLFALSILWAIYKLAPEQCASEAVEAGLAAKLLLVIQSGCNPVLKHMSAEFLKLCSLNYSASIFISKSNPSLPQNLSSSAGVVNCTRRSSHPRNSAVVLLCLSLYRPRLLLAYRTCARQLADPLGSEWSAWWFLHAVRACTCRFCLQVSPECRRSYWVLVFRLSCRRWQKEVAENPDCLRLEGRSRRRSRPLVEFVASQLENQNLMLSQCLLDWR 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00961 542 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 105 IPR013083 -
Adu08g00961 542 PANTHER WDSAM1 PROTEIN 7 395 IPR045185 GO:0061630
Adu08g00961 542 CDD RING-Ubox_PUB 25 67 IPR045210 -
Adu08g00961 542 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 7 395 - -
Adu08g00961 542 ProSiteProfiles U-box domain profile. 20 94 IPR003613 GO:0004842|GO:0016567
Adu08g00961 542 Pfam U-box domain 21 91 IPR003613 GO:0004842|GO:0016567
Adu08g00961 542 Gene3D - 106 222 IPR011989 -
Adu08g00961 542 SMART Ubox_2 24 87 IPR003613 GO:0004842|GO:0016567
Adu08g00961 542 Gene3D - 223 431 IPR011989 -
Adu08g00961 542 SUPERFAMILY RING/U-box 9 91 - -
Adu08g00961 542 SUPERFAMILY ARM repeat 109 217 IPR016024 -
Adu08g00961 542 SUPERFAMILY ARM repeat 227 389 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00961 Adu-Chr8 17459916 17464096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00961 7 394 U-box Gene Family AT3G49810 59.796 8.19e-158 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00961 - - aip:107608514 724.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00961 08 17459916 17464096 Adu08g00961 08 17459916 17464096 ECH