Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00941 ATGAATTTGAAGATGGATTCTGATAAAGCGAAGCTCTTTGTTGGGGGTATCTCGCGTGACACCACCGAGCACGTACTCAGAGATCACTTCGCCAGATACGGCGTCGTTTTGGATTGCACCATCTCCTTGGACCGCACTACCCGAATCCCTAGAGGTTTCGGCTTCGTTACTTTTTCCGATCTCGCTGCTGCTGATAAAGCTCTTCAGGACACCCATGTCATACTCGGAAGAACGGTAGAAGTGAAAAAAGCAATACCAAGAAGTGAGCAGCAACACCAACACCAAAATCAAGTACAGAACAGGGGAGCGAGTAACTATAGTTGTAATGACTGTAGCAGTGACAACATTAGGACTAAAAAGATTTTTGTAGGGGGTTTGTCTGCTGGTATCTCAGAGGAGGAGTTCAGGAAATACTTTGAGCGGTTTGGTCGCATAACTGATGTAGTGGTGATGCAGGACAGCGTAACTCACCGGCCTAGGGGATTCGGTTTCATCACTTTTGATTCTGAAGAGTCGGTACAAAATGTTATGGTGAAAAGTTTCCATGATTTGAATGGTAGACAGGTGGAGGTCAAGAGAGCTGTTCCAAAAGAGGGAAACTATGGTTATGATGGTTTTAATAAGCTAAGATACAGGAGTGAAAGAGGAGCCTCTAAAAGTTTTCCTCCTTATAGTCCTAGCTGCGCAGTTCCTGGCTTTGCGCCTCAGCCATGGTATAGTAATGATGGTGTTTATGTCTATGGATCAAGCAATTATGGTTGGTACCCTATGGGTGGGTATGGAAGTAACGGATATGCAGTGCCATCTGATATTTCTAGGAACTTCTGGTATGGGCCCATGATAGCCAGTCCTCAGGGATGTCATGTGCCTTATGCTAATGCTTTGCCGAATATTGCGTATATGGGTGGTAGGCTAGGAGTAGTAGGTAATGTAGTTGGAACTAGAGGGTACAATGGCATTCTTGGTGCTGCAAGAAATATAAAATCTGATCAACCTCTAACTGCCAATGGATTCATTCCAGGCAATGTGACATTACATCAAGTTGTGACTCAAGATGTGGTCTCTTCTAATTTGAAAGGATCAAATGGTGAAATTTCTAGTTGA 1104 0.4402 MNLKMDSDKAKLFVGGISRDTTEHVLRDHFARYGVVLDCTISLDRTTRIPRGFGFVTFSDLAAADKALQDTHVILGRTVEVKKAIPRSEQQHQHQNQVQNRGASNYSCNDCSSDNIRTKKIFVGGLSAGISEEEFRKYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQNVMVKSFHDLNGRQVEVKRAVPKEGNYGYDGFNKLRYRSERGASKSFPPYSPSCAVPGFAPQPWYSNDGVYVYGSSNYGWYPMGGYGSNGYAVPSDISRNFWYGPMIASPQGCHVPYANALPNIAYMGGRLGVVGNVVGTRGYNGILGAARNIKSDQPLTANGFIPGNVTLHQVVTQDVVSSNLKGSNGEISS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00941 367 SMART rrm1_1 11 82 IPR000504 GO:0003723
Adu08g00941 367 SMART rrm1_1 120 192 IPR000504 GO:0003723
Adu08g00941 367 Gene3D - 2 113 IPR012677 -
Adu08g00941 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 196 IPR000504 GO:0003723
Adu08g00941 367 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 357 - -
Adu08g00941 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Adu08g00941 367 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 5 357 - -
Adu08g00941 367 Gene3D - 116 198 IPR012677 -
Adu08g00941 367 SUPERFAMILY RNA-binding domain, RBD 91 206 IPR035979 GO:0003676
Adu08g00941 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 79 IPR000504 GO:0003723
Adu08g00941 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 187 IPR000504 GO:0003723
Adu08g00941 367 SUPERFAMILY RNA-binding domain, RBD 6 106 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00941 Adu-Chr8 17197348 17199323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00941 12 283 Eukaryotic Initiation Factors Gene Family AT2G36660 24.910 1.02e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00941 K14411 - gmx:100816822 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00941 08 17197348 17199323 Adu08g00941 08 17197348 17199323 ECH