Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00939 ATGAAGTGGATCAACAGTGATAGTAACAATCATCACGCCTGGTTGGGCTTCTCTCTCTCACCCCATCACATGAAATTCGACCTTCCTAATTCTTCTTCTTCTTCTACTACTACTACTTCTTCCTCCTCCTCCTGCGGTGGAGATCACAGTGCTGCCTTTCATTCTCAGTTGAGCGTGATGCCTCTCAAGTCAGACGGTTCACTTTGCATCATGGAAGCTCTCACTAGATCACATCAAACGCAACAAGTGATGGTTGGTAGTTCGTCTCCGAAGCTGGAAGACTTTCTGGGTGGTGCAAGCATGGGAACACACGAAAGAGAGGCCATTGACACTATCTACTACCCTCCTCATAGAGGCTTTCTCTCAGAGCCTTTGAGGCATCCACCATATTACTCCTTTGCCTGCCATGGCATGTACCAAGCACCACCCCCAACAATGCCCCACATAGCAGAAGCAGAAGAAGAAGAAGAAGAAGGCATTGATGGATTCAAGAAGTGGGTGGAGCAGCAGCAGCAGCAACAGTCGCTGAGTCTGTCAATGAGTCCAGGGTCGGAGTCAAGTTGTGTAACAGCTGCGAAGCATGAGAATGGGAAGAGTGAGTCGTCGGTGGTGGCAGTAACAGTAATGGAGAATAGCAACAAGAAGAGAGGGCTAGCTAACAAGCAACCAGTTCACAGAAAATCCATTGACACTTTTGGTCAGAGAACTTCTCAGTATCGAGGCGTCACCAGGCATAGATGGACTGGTAGATACGAAGCACATTTATGGGATAACACTTGCAAGAAGGAAGGCCAAACTAGGAAAGGAAGACAGGTGTATTTGGGGGGTTATGATATGGAACAAAAAGCTGCAAGAGCCTATGATCTTGCTGCCCTTAAGTACTGGGGACCTTCAACCCACATCAATTTTCCGTTGGAAAATTACCAAGCGGAACTTGAGGAGATGAAGAACATGACCAGGCAGGAATATGTCGCCCACTTGAGAAGAAAAAGCAGTGGATTTTCTAGGGGTGCTTCAATATACAGAGGGGTGACAAGACATCATCAACATGGAAGATGGCAAGCAAGGATTGGCAGAGTTGCTGGGAACAAGGACCTTTACCTTGGGACATTCAGCACTCAAGAGGAGGCAGCAGAAGCATATGATGTAGCAGCAATCAAGTTCCGTGGTTCCAATGCAGTTACAAACTTTGACATATCAAGATACGACGTGGAAAGAATCATGGGGAGTAACACTTTGCTTGCAGGGGAGCTAGCTAGGCGAAACAACAAAGATACTGCTATTGACCCACCAAGATGGGAGGCCATTGAATACAACACGAATGTGGAAGCAGTTCAAGCTAGAAACAACAACAATGACAATACTAATAATAACAATGATGTTGATTCAAACTGGAAGATGGTTTCTGGTGGTGCTTTCTCTGTGGGGATACATGATCTGATTGGGATTGAAGGGCAGCAGCCATTGATGGAGGCTTCTTCGCTTGTGACCAGCCTAAGCAGCTCAAGAGAGGCTAGCCCTGAAAAAATAATGGGTCCCTCGTCAATGATGTTTCCAAAACCTCTTCAACTTGAACCCAAGATGGTTCTTAACAACCCCTTAACTAGTACTGGTGTTGTTGGATCTTGGTTCCCTTCTCAAATGAGGCCAGCTTCTTTGTCTCACTTGCCTGTTTTTGCTGCTTGGAACGATACCTAG 1698 0.4635 MKWINSDSNNHHAWLGFSLSPHHMKFDLPNSSSSSTTTTSSSSSCGGDHSAAFHSQLSVMPLKSDGSLCIMEALTRSHQTQQVMVGSSSPKLEDFLGGASMGTHEREAIDTIYYPPHRGFLSEPLRHPPYYSFACHGMYQAPPPTMPHIAEAEEEEEEGIDGFKKWVEQQQQQQSLSLSMSPGSESSCVTAAKHENGKSESSVVAVTVMENSNKKRGLANKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNTCKKEGQTRKGRQVYLGGYDMEQKAARAYDLAALKYWGPSTHINFPLENYQAELEEMKNMTRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGSNAVTNFDISRYDVERIMGSNTLLAGELARRNNKDTAIDPPRWEAIEYNTNVEAVQARNNNNDNTNNNNDVDSNWKMVSGGAFSVGIHDLIGIEGQQPLMEASSLVTSLSSSREASPEKIMGPSSMMFPKPLQLEPKMVLNNPLTSTGVVGSWFPSQMRPASLSHLPVFAAWNDT 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00939 565 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 171 563 - -
Adu08g00939 565 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 10 107 - -
Adu08g00939 565 PRINTS Ethylene responsive element binding protein signature 239 250 IPR001471 GO:0003700|GO:0006355
Adu08g00939 565 PRINTS Ethylene responsive element binding protein signature 380 400 IPR001471 GO:0003700|GO:0006355
Adu08g00939 565 SMART rav1_2 238 310 IPR001471 GO:0003700|GO:0006355
Adu08g00939 565 SMART rav1_2 340 404 IPR001471 GO:0003700|GO:0006355
Adu08g00939 565 SUPERFAMILY DNA-binding domain 237 306 IPR016177 GO:0003677
Adu08g00939 565 Gene3D AP2/ERF domain 237 306 IPR036955 GO:0003700|GO:0006355
Adu08g00939 565 Gene3D AP2/ERF domain 340 400 IPR036955 GO:0003700|GO:0006355
Adu08g00939 565 ProSiteProfiles AP2/ERF domain profile. 238 304 IPR001471 GO:0003700|GO:0006355
Adu08g00939 565 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT ISOFORM X1 171 563 - -
Adu08g00939 565 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT ISOFORM X1 10 107 - -
Adu08g00939 565 Pfam AP2 domain 238 296 IPR001471 GO:0003700|GO:0006355
Adu08g00939 565 Pfam AP2 domain 340 390 IPR001471 GO:0003700|GO:0006355
Adu08g00939 565 SUPERFAMILY DNA-binding domain 339 400 IPR016177 GO:0003677
Adu08g00939 565 CDD AP2 339 400 IPR001471 GO:0003700|GO:0006355
Adu08g00939 565 CDD AP2 237 304 IPR001471 GO:0003700|GO:0006355
Adu08g00939 565 ProSiteProfiles AP2/ERF domain profile. 340 398 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00939 Adu-Chr8 17161831 17165153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00939 3 428 AP2-EREBP Transcription Factor Family AT4G37750 55.464 1.95e-161 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Adu08g00939 AP2 3.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00939 K09285 - gmx:100802454 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00939 08 17161831 17165153 Adu08g00939 08 17161831 17165153 ECH
Adu06g03072 06 108832267 108836727 Adu08g00939 08 17161831 17165153 PCT