Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00938 ATGAGTAGTGATGTTGAAAATGCCATGAGGCTTCAACAGGAAGAGAAAAAGGGCATTCTGATGAGTTGTCCTTCTTCATTGGGTTTGGGGACAAGTGGTTCAGAAATGGCAAGTTCTAATTCTGAGCCTTCAAATGTAGCTAATCCCTTTCTTGCTTCCTCTGCTTGGGATCCTCTTACTCCTTTAACTCAACTTCAAACTACTAATACTACTACTCTTGTTGGAGACCCTTCTACTTCTTCAATACCAATACCAATACCAATGGTTTCTCATCATAATAATGAATTCTCCAACTCATTGTTGTACACTCTTGTTTTGGAAAACCAGCAGGCTCCCCACATTGTTCAATACATGTCTAGAGATATGGTTCCAATCCCCAAGGTTCAGGTTCCTGTATCCTATGGAAGTGGGAGCTTCTCTGAAATGGTTGGCTCCTTTCTCCAATCTCCAAACAGTGAGCACTCACAGGGAGAAGGAGAAGGAGAAGATTCAGGATCAGCACCTAGTGGAAATAGAAGAAGAAAGAGAGGCCATGAACATAATAATAACTCTACTTTCAGTCCAAACAAGAATGCTGAAGATTGTTCTGGGAAGAGAAAAAATCAAGATGATGAGAAGAAAGCAAAAGTGGAAGAAAATAAAGACAAAAGTGGTCAAAGTGGAGAAACACCTAAAGAGAATTTCATTCATGTGAGAGCAAGAAGAGGCCAAGCTACTAACAGTCACAGCCTTGCAGAAAGGGTAAGGAGAGAAAAGATTAGTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACTGGCAAAGCAGTGATGCTTGATGAGATTATAAACTATGTGCAATCATTGCAACAGCAGGTTGAGTTTTTGTCCATGAAACTTGCCACTGTGAACCCAGAGCTGAATTTGGACCTAGAGCGGATTCTCTCAAAAGATATTCTGCAATCACGAATTGGTGGATATGGTGGTGGTATAAGCTGCTCTCAAGCATTCCCTAGTTCCAGCTTCCAAGGAACACTAGTGCCCATGCCTACCACTTCAAATCAACTCCCTCCCTTGCCTCAGAGTCTGTTGGACCATGAATTCCAAAACTTGTATGGAATGAGCTATGATTCTAGTACAGCTCTTGGGAACATGGGGCACAATGGAGGATCCAAACCAGAGTTATAG 1182 0.4196 MSSDVENAMRLQQEEKKGILMSCPSSLGLGTSGSEMASSNSEPSNVANPFLASSAWDPLTPLTQLQTTNTTTLVGDPSTSSIPIPIPMVSHHNNEFSNSLLYTLVLENQQAPHIVQYMSRDMVPIPKVQVPVSYGSGSFSEMVGSFLQSPNSEHSQGEGEGEDSGSAPSGNRRRKRGHEHNNNSTFSPNKNAEDCSGKRKNQDDEKKAKVEENKDKSGQSGETPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDLERILSKDILQSRIGGYGGGISCSQAFPSSSFQGTLVPMPTTSNQLPPLPQSLLDHEFQNLYGMSYDSSTALGNMGHNGGSKPEL 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00938 393 CDD bHLH_AtBPE_like 227 312 - -
Adu08g00938 393 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 237 287 IPR011598 GO:0046983
Adu08g00938 393 MobiDBLite consensus disorder prediction 143 241 - -
Adu08g00938 393 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 14 153 IPR024097 GO:0006355
Adu08g00938 393 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 159 393 IPR024097 GO:0006355
Adu08g00938 393 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 235 304 IPR036638 GO:0046983
Adu08g00938 393 MobiDBLite consensus disorder prediction 193 232 - -
Adu08g00938 393 Gene3D - 234 309 IPR036638 GO:0046983
Adu08g00938 393 Pfam Helix-loop-helix DNA-binding domain 240 288 IPR011598 GO:0046983
Adu08g00938 393 SMART finulus 243 293 IPR011598 GO:0046983
Adu08g00938 393 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 159 393 - -
Adu08g00938 393 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 14 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00938 Adu-Chr8 17143045 17145002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00938 47 393 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 43.213 1.36e-74 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Adu08g00938 HLH 4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00938 - - adu:107461155 736.487