LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu08g00929	ATGGAGGAATACACTAATAATAGCAACAATAATCAAAGCCCAAGTTCAAGTTCAAGGGCAAGTTTCTTGTACTCTTCCTTTGGTGTTGGTGCTGCTACTTCTTCAAGCATACCCCATCACCTTCCAATTAACACCTTTCATCTTCTTCATCATCATCAATCTGAAGCTGCTGCTGGATCCGATCACTGCTTTCAATCCCATCAAGTACCATCCGTCAAAACCGAACCCAGAAACTCCTCGCAGCAGATTTTCAACTATCCTCTCATGAGACCCAATGATCTTCATCATTCGAGCGACCAAGGAGGAACCCAAAACTCCAACGATGATGTTGAAGCCATCAAAGCCAAAATCATCGCCCATCCTCACTACTCTAATCTCTTACAAGCCTACATGGATTGCCAAAAGGTAGGAGCTCCGCCGGAAGTGGTGGCGCGTTTAAGCGCGGCTCGGCAGGAATTCGAGGCACGGCAGCGCTCTATGGTTGGTTCCACCAGGGAAGCTTGCGGCAAGGACCCTGAACTTGACCAATTCATGGAGGCATACTATGATATGCTTGTGAAGTACCGAGAGGAACTTTCAAGGCCTATACAAGAGGCTATGGACTTCATGCGCAGGATTGAAACTCAGCTTAATATGCTTTCCAATGGACCCCTTCGCATCTTCTCTGATGATAAATGTGAAGGAGTGGGTTCATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATTGATCCTCGGGCAGAAGACCGTGAACTGAAGAACCACTTGCTTAGAAAGTACAGCGGCTACTTAAGCAGCCTGAAGCAAGAACTGTCAAAGAAGAAGAAGAAAGGAAAACTCCCTAAAGATGCCAGGCAAAAGCTACTTACTTGGTGGGAGCTACATTATAAATGGCCTTATCCTTCGGAATCAGAGAAGGTAGCATTGGCAGAATCAACAGGACTGGATCAGAAGCAAATAAACAACTGGTTCATAAATCAAAGGAAGAGACACTGGAAACCATCTGAAGACATGCAATTCATGGTCATGGATGGACTCCATCCGCATAATAATCATCAGAACGCATCTCCTCTCTACATGGATTCCCATTATGTTATGCCTGATGGACATTACCGCTTACCACCATAA	1188	0.42	MEEYTNNSNNNQSPSSSSRASFLYSSFGVGAATSSSIPHHLPINTFHLLHHHQSEAAAGSDHCFQSHQVPSVKTEPRNSSQQIFNYPLMRPNDLHHSSDQGGTQNSNDDVEAIKAKIIAHPHYSNLLQAYMDCQKVGAPPEVVARLSAARQEFEARQRSMVGSTREACGKDPELDQFMEAYYDMLVKYREELSRPIQEAMDFMRRIETQLNMLSNGPLRIFSDDKCEGVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLTWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPHNNHQNASPLYMDSHYVMPDGHYRLPP	395

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu08g00929	395	SUPERFAMILY	Homeodomain-like	292	367	IPR009057	-
	Adu08g00929	395	SMART	ELK_2	271	292	IPR005539	GO:0003677
	Adu08g00929	395	SMART	ELK_2	173	193	IPR005539	GO:0003677
	Adu08g00929	395	ProSiteProfiles	'Homeobox' domain profile.	291	354	IPR001356	GO:0003677
	Adu08g00929	395	ProSiteProfiles	ELK domain profile.	271	291	IPR005539	GO:0003677
	Adu08g00929	395	CDD	homeodomain	303	355	IPR001356	GO:0003677
	Adu08g00929	395	Gene3D	-	296	358	-	-
	Adu08g00929	395	SMART	KNOX1_2	111	155	IPR005540	GO:0003677\|GO:0005634
	Adu08g00929	395	MobiDBLite	consensus disorder prediction	59	87	-	-
	Adu08g00929	395	Pfam	KNOX2 domain	169	213	IPR005541	GO:0003677\|GO:0005634
	Adu08g00929	395	ProSitePatterns	'Homeobox' domain signature.	329	352	IPR017970	GO:0000981\|GO:0006355
	Adu08g00929	395	Pfam	KNOX1 domain	112	154	IPR005540	GO:0003677\|GO:0005634
	Adu08g00929	395	SMART	HOX_1	293	358	IPR001356	GO:0003677
	Adu08g00929	395	Pfam	ELK domain	271	292	IPR005539	GO:0003677
	Adu08g00929	395	PANTHER	HOMEOBOX PROTEIN KNOTTED-1-LIKE 1	1	386	-	-
	Adu08g00929	395	SMART	KNOX2_2	164	215	IPR005541	GO:0003677\|GO:0005634
	Adu08g00929	395	MobiDBLite	consensus disorder prediction	59	108	-	-
	Adu08g00929	395	Pfam	Homeobox KN domain	311	350	IPR008422	GO:0003677\|GO:0006355
	Adu08g00929	395	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	1	386	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu08g00929	Adu-Chr8	16940500	16944520	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu08g00929	48	395	Homeobox Transcription Factor Family	AT4G08150	62.222	2.94e-130	378

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Adu08g00929		KNOX2	1e-24	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu08g00929	-		-	gmx:100807602	470.314