Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00927 ATGCTCCAAAACCTTCGAATCCCTAACTCCGATGGAGGAGGAGGAGTACCACTCTCTCCATTCTCTATCGATGCCGAAGATCCTGACAGTCAACACCACCTCCACGTGTTCTCCACCGATCATTTTCGAATGTTCGACTTCAAGGTTCTGAACTGTCCACGTGGCAGGTCGCACGACTGGACGGAGTGCCCCTACGCTCACCCCGCGGAGAAGGCTCGCCGGAGAGACCCTCGAAAGTACCATTACTCCGGCACTGCGTGTCCGGAGTTTAGAAAAGGGCATTGCCGAAAAGGTGACTCGTGCGAGTTCGCTCACGGCGTGTTCGAGTGCTGGCTCCACCCTCAAAGATACAGGACACATCTCTGCAAGGACGGCGCGGCCTGCCGCCGCCGCGTCTGCTTCTTTGCACACGCGCCGGATCAGCTGCGCGTGCTGGCTCCCAACTCGGCCGAGTCGCAACTCAGCGACTCGCGGAGTCTTCGTCGCAATAAAAACAACAACGTTTCTTCGCCTACTTCAGTTCTTAATTACTCTTGCTATTTCCCGGAGTCGCCGCCATCTTCGCCTGGGGATCCTCGACACGGCGTCGTTCCGTTTAGTACGGTGCGGGAGTTGGTGAGCTCAATGCGGAACATGCAGCTTGAGGAAATGGGCTGTGGGCCTCAGATGGGCTGTGTGTATGGGTCTCCGCAATTGGGCCTGGGCCCAATGAGCGGGTGTGAGGAAGAGCCTGCAATGGAGAGAGTGGAATCTGGGAGAGACATTAGGGCGAGAATGTACGCGAAGCTGAGTAGGGAGAACTCGTCGATTGGGAGAAGCGAGGGTCCTTTCCCTGATATTGGATGGGTCTCTGAACTCCTAAAATGA 867 0.564 MLQNLRIPNSDGGGGVPLSPFSIDAEDPDSQHHLHVFSTDHFRMFDFKVLNCPRGRSHDWTECPYAHPAEKARRRDPRKYHYSGTACPEFRKGHCRKGDSCEFAHGVFECWLHPQRYRTHLCKDGAACRRRVCFFAHAPDQLRVLAPNSAESQLSDSRSLRRNKNNNVSSPTSVLNYSCYFPESPPSSPGDPRHGVVPFSTVRELVSSMRNMQLEEMGCGPQMGCVYGSPQLGLGPMSGCEEEPAMERVESGRDIRARMYAKLSRENSSIGRSEGPFPDIGWVSELLK 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00927 288 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 106 IPR000571 GO:0046872
Adu08g00927 288 PANTHER UNKEMPT FAMILY MEMBER 27 231 IPR045234 -
Adu08g00927 288 PANTHER UNKEMPT FAMILY MEMBER 239 287 IPR045234 -
Adu08g00927 288 MobiDBLite consensus disorder prediction 149 169 - -
Adu08g00927 288 ProSiteProfiles Zinc finger C3H1-type profile. 82 108 IPR000571 GO:0046872
Adu08g00927 288 Gene3D - 82 145 - -
Adu08g00927 288 SMART c3hfinal6 81 107 IPR000571 GO:0046872
Adu08g00927 288 SMART c3hfinal6 116 139 IPR000571 GO:0046872
Adu08g00927 288 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 239 287 - -
Adu08g00927 288 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 27 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00927 Adu-Chr8 16853892 16855271 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00927 21 149 C2H2 Transcription Factor Family AT5G12850 62.016 6.85e-55 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Adu08g00927 zf-CCCH 1.1e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00927 - K23048 adu:107461217 617.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00927 08 16853892 16855271 Adu08g00927 08 16853892 16855271 ECH