Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00900 ATGGCGGGAAGAATGAGAGTGAAGGAGGAAGAGGAGACTGTGGTTTTGTGTGGGAGCGGACCAGGTGGTTCATCTTCTTCATCAAGCGTGTCACCGCAACCCATGGAAGGGTTGCACGATGTGGGACCACCACCGTTTCTGACGAAGACCTTCGAAGTGGTGGAGGATCCTTCCACCGACTCCATTGTTTCTTGGAGCAGAGCTCGCAACAGCTTCGTTGTGTGGGACTCGCACAGATTCTCCACCACGATCTTGCCTCGTTACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACTTACGGGTTTAGGAAAGTGGATCCTGATCGATGGGAATTTGCGAACGAGGGGTTCTTGGCAGGGCAGAAGCACTTGTTGAGGACGATAAAGAGGAGGAGGAATGTGACGCAGTCGTCAACGAACACGATCCAGCATGGAGAAGGAGGAGGAGGAGGAAGTTGTGTTGAGTTAGGTGAGTTTGGTTTGGAAGGTGAGATAGAGAGGCTGAGAAGGGATAGGACGGTGTTAATGGCGGAGATCGTGAAGCTGAGGCAGCAACAGCACAACTCAAGGGAGCGGATTTGTTCAATGGAGTCAAGGTTGCAAGTCACAGAGAAGAAACAAACTCAGATGATGACTTTCCTGGCCAAAGCACTCCACAACCAGTCTTTCATTCATAACCTTTCTCTTCAGAACAGAGAATTACAGGGTTTTGAGATGAGCAGGAAGAGGAGAATAACTGCTACCGCAAGTGTGGAGAATCTGCAAGAGGATCCTGTTGCTGTTGAAGAGCAAGAGGAATTGACGAGTATTGGGTGTGAGATAGAGACACTTTTGTCAAGTGCTTGCGATAATGAATCAAGCAGTGAAatgaaggagcctactgctgctgctgctgctgctgctaccagtGAGAATATATGGGAAGATTTGCTTAGTGAGGATTTAGTTGGTGGGAATCCGGAGGATGAAGTTGTCATTGGTGATTACCCACACCAAAATCTTGAAGATTTGGCTGCAACAAACACTGGTGATTGGTCTGAAGACTTGCAGAAACTTGTGGATCATATGGGTTTTCTTGCCTCTAATCCATAA 1104 0.4601 MAGRMRVKEEEETVVLCGSGPGGSSSSSSVSPQPMEGLHDVGPPPFLTKTFEVVEDPSTDSIVSWSRARNSFVVWDSHRFSTTILPRYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLAGQKHLLRTIKRRRNVTQSSTNTIQHGEGGGGGSCVELGEFGLEGEIERLRRDRTVLMAEIVKLRQQQHNSRERICSMESRLQVTEKKQTQMMTFLAKALHNQSFIHNLSLQNRELQGFEMSRKRRITATASVENLQEDPVAVEEQEELTSIGCEIETLLSSACDNESSSEMKEPTAAAAAAATSENIWEDLLSEDLVGGNPEDEVVIGDYPHQNLEDLAATNTGDWSEDLQKLVDHMGFLASNP 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00900 367 Gene3D - 39 136 IPR036388 -
Adu08g00900 367 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 25 323 IPR027725 -
Adu08g00900 367 SUPERFAMILY "Winged helix" DNA-binding domain 42 135 IPR036390 -
Adu08g00900 367 MobiDBLite consensus disorder prediction 19 34 - -
Adu08g00900 367 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 25 323 - -
Adu08g00900 367 SMART hsfneu3 42 135 IPR000232 GO:0003700|GO:0006355|GO:0043565
Adu08g00900 367 ProSitePatterns HSF-type DNA-binding domain signature. 85 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
Adu08g00900 367 MobiDBLite consensus disorder prediction 1 38 - -
Adu08g00900 367 Pfam HSF-type DNA-binding 46 135 IPR000232 GO:0003700|GO:0006355|GO:0043565
Adu08g00900 367 Coils Coil 169 189 - -
Adu08g00900 367 PRINTS Heat shock factor (HSF) domain signature 46 69 IPR000232 GO:0003700|GO:0006355|GO:0043565
Adu08g00900 367 PRINTS Heat shock factor (HSF) domain signature 84 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Adu08g00900 367 PRINTS Heat shock factor (HSF) domain signature 97 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00900 Adu-Chr8 16507508 16510045 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00900 32 367 HSF AT2G26150 52.059 1.60e-122 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Adu08g00900 HSF_DNA-bind 2.8e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00900 K09419 - gmx:100794605 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00900 08 16507508 16510045 Adu08g00900 08 16507508 16510045 ECH
Adu06g02998 06 107984454 107987297 Adu08g00900 08 16507508 16510045 PCT