Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00871 ATGTCAAGCACATTCATGAACGGTGGTGGTGGTGTTAGAGACTTGTATGGTGAAGACAGAGCCACGGAGGATCAGCTTATCATCACCCCTCGGTCCTTCTCTGTCTCAAGTGGCTGCACTCTGCTGCGCGATCCGCGCTACAACAAAGGCCTCGCCTTCACTGAGAGAGAAAGAGATGCTCATTACCTGCGAGGCCTTTTGCCACCAGCAGTATTCAATCAAGAACTTCAGGAGAAGAGGTTGATGCATAACCTTCGCCAGTATGAAGTTCCTCTGCATAGGTACATGGCCATGATGGATCTTCAGGAGAGGAATGAGAGGCTGTTTTACAAGATTCTGATCGATAACGTTGAGGAACTGCTTCCTGTTGTTTACACTCCAACTGTGGGAGAAGCCTGCCAGAAATATGGAAGCATTTTCCGTCGTCCGCAGGGTCTATACATCAGTTTGAAAGAGAAAGGCAAGATCCTTGAAGTACTGAAAAACTGGCCAGAGAAGAACATTCAAGTTATTGTTGTCACTGATGGTGAGCGTATATTAGGACTCGGAGATCTTGGCTGCCAGGGAATGGGGATTCCTGTTGGGAAGCTTTCACTCTATACTGCATTGGGAGGGGTTCGCCCTTCATCATGCTTGCCTATAACCATTGATGTTGGCACAAACAATGAGAAGTTGTTGAATGATGAGTTTTACATTGGTCTCAGACAAAAGCGCGCAACTGGGAAGGAATATGCTGAGCTTCTAGATGAGTTCATGCGCGCTGTTAAGCAGAACTATGGGGAGAAAGTTCTTATTCAGTTTGAAGACTTCGCGAATCATAATGCATTCGATCTGCTTGCAAAATACAGTTCATCTCATCTTGTTTTCAATGATGATATTCAGGGTACAGCATCTGTGGTATTAGCAGGATTGCTTGCTTCCTTAAAATTAGTTAGGGGAACCTTAGCTGATCATACCTTCTTATTTTTGGGTGCTGGAGAGGCTGGAACTGGTATTGCAGAGTTGATAGCACTTGAGATATCAAAACAGACAAAAGCTCCAGTGGAAGAAACCCGCCAGAAAATTTGGCTTGTCGACTCCAAGGGTCTTATTGTTAGCTCTCGCCTCGGATCGCTTCAGCACTTCAAAAAGCCTTGGGCACATGAGCATGAACCTGTAAAGGAGCTTGTTGATGCTATCAAGGCAATCAAGCCAACAGTATTGATTGGATCATCTGGAGTAGGGAAGACATTTACCAAAGAAGTGATTGAAGCCATGGCATCATTGAATAAGAAACCACTCATTCTTGCTCTCTCCAATCCAACATCTCAATCTGAGTGCACTGCTGAAGAAGCTTATACATGGAGCAAGGGACAAGCAATCTTTGCCAGTGGTAGCCCATTTGATCCTGTTGAATATGAAGGAAAAGTCTTTGTTCCTGGACAGGCCAACAATGCTTACATATTCCCTGGTTTTGGCTTGGGTTTGATCATCTCCGGTGCAATCCGCGTACGCGATGAGATGCTCTTGGCAGCCTCTGAAGCTTTGGCAGCACAAGTGTCACAGGAGAACTATGATAAAGGACTGATTTACCCTCCATTCTCAAATATCAGAAAGATATCAGCACATATTGCTGCTAACGTGGCAGCCAAGGCATATGAACTTGGTCTTGCTTCTCATCTACCTCGACCTAAGGATCTTGTCAAATATGCAGAAAGTTGCATGTACAGCCCAGGCTACAGAAACTACCGTTGA 1734 0.4516 MSSTFMNGGGGVRDLYGEDRATEDQLIITPRSFSVSSGCTLLRDPRYNKGLAFTERERDAHYLRGLLPPAVFNQELQEKRLMHNLRQYEVPLHRYMAMMDLQERNERLFYKILIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSSCLPITIDVGTNNEKLLNDEFYIGLRQKRATGKEYAELLDEFMRAVKQNYGEKVLIQFEDFANHNAFDLLAKYSSSHLVFNDDIQGTASVVLAGLLASLKLVRGTLADHTFLFLGAGEAGTGIAELIALEISKQTKAPVEETRQKIWLVDSKGLIVSSRLGSLQHFKKPWAHEHEPVKELVDAIKAIKPTVLIGSSGVGKTFTKEVIEAMASLNKKPLILALSNPTSQSECTAEEAYTWSKGQAIFASGSPFDPVEYEGKVFVPGQANNAYIFPGFGLGLIISGAIRVRDEMLLAASEALAAQVSQENYDKGLIYPPFSNIRKISAHIAANVAAKAYELGLASHLPRPKDLVKYAESCMYSPGYRNYR 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00871 577 Pfam Malic enzyme, N-terminal domain 102 282 IPR012301 GO:0004471
Adu08g00871 577 Pfam Malic enzyme, NAD binding domain 293 545 IPR012302 GO:0051287
Adu08g00871 577 Gene3D - 36 290 IPR037062 GO:0004471
Adu08g00871 577 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 293 576 IPR036291 -
Adu08g00871 577 SMART malic_2 102 283 IPR012301 GO:0004471
Adu08g00871 577 PIRSF ME 15 577 IPR001891 GO:0004470|GO:0004471
Adu08g00871 577 ProSitePatterns Malic enzymes signature. 289 305 IPR015884 GO:0004471
Adu08g00871 577 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 30 292 IPR046346 -
Adu08g00871 577 PRINTS Malic enzyme signature 320 336 IPR001891 GO:0004470|GO:0004471
Adu08g00871 577 PRINTS Malic enzyme signature 168 197 IPR001891 GO:0004470|GO:0004471
Adu08g00871 577 PRINTS Malic enzyme signature 204 226 IPR001891 GO:0004470|GO:0004471
Adu08g00871 577 PRINTS Malic enzyme signature 108 132 IPR001891 GO:0004470|GO:0004471
Adu08g00871 577 PRINTS Malic enzyme signature 289 305 IPR001891 GO:0004470|GO:0004471
Adu08g00871 577 PRINTS Malic enzyme signature 423 439 IPR001891 GO:0004470|GO:0004471
Adu08g00871 577 PRINTS Malic enzyme signature 264 282 IPR001891 GO:0004470|GO:0004471
Adu08g00871 577 CDD NAD_bind_1_malic_enz 293 571 - -
Adu08g00871 577 Gene3D - 291 577 - -
Adu08g00871 577 PANTHER MALIC ENZYME-RELATED 8 577 - -
Adu08g00871 577 SMART Malic_M_2 293 546 IPR012302 GO:0051287
Adu08g00871 577 PANTHER MALIC ENZYME 8 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00871 Adu-Chr8 16245153 16249381 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00871 K00029 - gmx:100818219 1062.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00871 08 16245153 16249381 Adu08g00871 08 16245153 16249381 ECH
Adu08g00871 08 16245153 16249381 Adu09g00311 09 3291242 3298122 ECH
Adu08g00871 08 16245153 16249381 Adu07g01770 07 52961229 52967193 ECH
Adu03g01866 03 32690284 32694457 Adu08g00871 08 16245153 16249381 ECH
Adu09g00311 09 3291242 3298122 Adu08g00871 08 16245153 16249381 ECH
Adu07g01770 07 52961229 52967193 Adu08g00871 08 16245153 16249381 ECH