Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00870 ATGTATTCCATGCTCCTACAAAATTGTAGGTTTCATCCCTGCGTCCGCCGCCGCTCCCTGCTTCTGCCGCCGCCGCGCAGGACTCTGCCTAAACGCTTGGAGGAAGTAGAGGAAAGTGTAAAAGTACTAAAAGATGCATCTAAGACGAAAAAAGTAGCAGCAGAGAAGGTTCTGCCTGCACTTTCTGTCATTGAGAAAGCAAAAATTGATCCTTCTGGCTTTCTTGAAACCCTGGTTGGCAATGAATCCCCTGGGAGGACATGGATGCTAATTTTCACCGCTGAGTTTGAAAACTTAAAATGGTCCTCTGAACTTGTTTCTTTGGAACGTCCTGATTCGTGGTTAGAGAAGGTTAAGACTACTCTGATAGATATATATGCAAAATGTGGTTCTGTGAGAGTTGCTCGTGCCTTGTTCGAAATGCTTAGGGAGAAAAGAGTTGTGTCTTGGAATGCAATTATCACTGGTTATGCAATGCATGGTCTTGCCAAGGAAGCCTTGGAACTCTTTGAGGTAATGAGGAAAGAGGCTCGGCCGGATCTTATAACCTTTGTTGGTGTTCTAGCAGCTTGCAGCCGTGGGCTTCTACTCAATGAAGGGCAAGCATTTTATGATATGATGATGAGGGATTATGGTATCAATCCAACTGTTCAACACTACACATGCATGGAAGTTGTGGGTCAAGAATTTTCTCATGAAGGGGTTAATAGCGAGCATACATCATATGATCAGTATGAGCAGGAGGAAGAAAAATATGAGGAAGTTGACGTGGATTATATGGATGAGGACGACACAAGTGTGGAACCAATGTTCGATTATCACGGCTTCGATGAAAGATATGCAAGGACAAGAGGCTTTAGTGCTCGGAAGAACAGGAGTAGGAAGAGTCGTGCGGGCGCACTTAAGTTGAAGAATTTTGTATGTCATCGTGAAGGATTTAGACTGCAAAATAATTACGGCATTGGAAACCTTAAGAGAAAACCTACACCCGAGACAAGGTGTGGCTGCAGTGCAATGATGGAGATTCGTGTAGATGCACCTAGTGGTCGTTGGTACAATCTGGTTGAGTTCATTCAACACTTTAATCGTTGTGTCGACCATATGAGGTGGAAAGAGGTACAGGCTGACCTCGCTTCTGTGAATGGGAGACCCAGTTTGCAAACCTATTTTCAACAGTTAGAGAGGAGTGCTGTCAATGTTTACACCCTATCAATATTTCATATGTTCCAACCAATCCTTGTACGGGCTGCATCAATGAAGACCAAACGCCAAATAAGATGTGGTTGTGACATTGAGATGGAATTCAATTGTTCATGTATGAGAATGGAATCATTTGGCATACCTTGTGAACACATAATTTGCGTCTTGGTGCATGAAGATATAGAGGAGTTGCCAAGGTCATTAGTCTTGCCTCGGTGGACCAAGACTGCCAAAGTTAGTTTCCAAAATGCTCGAGGGCTTCATTGGGATTCTTTGATGCTAAGTCAATATGGTTGTTTGATGGATTGGTTTAGACAACTAGCCAACTTTGCTTGTCGAGATAACGAGAGATTTATCTTTACACGGGAAATGGCTATGAATTTGTTGAAACAATTTAAGGAGGAAGATGCTGCACAAAAAGAGTTGGTCAATGATGCAGATAGTGTAAGAGATGGTGTGCAAGTGGATAATTCTGGAGCTGGGCTCGCAACCAATGATCTCGGACATAGCATGCCAAGGGACCCAAGAAAATGTAGGACAAAAGGGGGGCTTCACAGTCCAATAAAAGAAAACATCGATGTGGACAGTGTGGCATGGAGGGCCACAATCGAACAACTTGTCGTGTATATGATGAGAATGCTTCGTACAGTAGCAATGAAGTGCTGTAATAAGGTTCTTCTTAGAGGCCATAAGAATGGACGAGAGGCTGTCAAGTACTTTGGACCAGCACCTGGTGTGCCCCATAGTCACACCAAGCCCTATGTTCGTTCAAAAGGATGGAAATTTGCACGTGCTAGAGGAAGAAGGACTAGCAAAGGCTTCAGAGTTTCAGTTCTGGAGCTCAAAGATGGAGGATTTTCATTTTTATCATGTGACCGTTCTGTATTGTTTTCCTTCTTTTTGTGTCGTTAA 2112 0.4342 MYSMLLQNCRFHPCVRRRSLLLPPPRRTLPKRLEEVEESVKVLKDASKTKKVAAEKVLPALSVIEKAKIDPSGFLETLVGNESPGRTWMLIFTAEFENLKWSSELVSLERPDSWLEKVKTTLIDIYAKCGSVRVARALFEMLREKRVVSWNAIITGYAMHGLAKEALELFEVMRKEARPDLITFVGVLAACSRGLLLNEGQAFYDMMMRDYGINPTVQHYTCMEVVGQEFSHEGVNSEHTSYDQYEQEEEKYEEVDVDYMDEDDTSVEPMFDYHGFDERYARTRGFSARKNRSRKSRAGALKLKNFVCHREGFRLQNNYGIGNLKRKPTPETRCGCSAMMEIRVDAPSGRWYNLVEFIQHFNRCVDHMRWKEVQADLASVNGRPSLQTYFQQLERSAVNVYTLSIFHMFQPILVRAASMKTKRQIRCGCDIEMEFNCSCMRMESFGIPCEHIICVLVHEDIEELPRSLVLPRWTKTAKVSFQNARGLHWDSLMLSQYGCLMDWFRQLANFACRDNERFIFTREMAMNLLKQFKEEDAAQKELVNDADSVRDGVQVDNSGAGLATNDLGHSMPRDPRKCRTKGGLHSPIKENIDVDSVAWRATIEQLVVYMMRMLRTVAMKCCNKVLLRGHKNGREAVKYFGPAPGVPHSHTKPYVRSKGWKFARARGRRTSKGFRVSVLELKDGGFSFLSCDRSVLFSFFLCR 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00870 703 Gene3D Tetratricopeptide repeat domain 114 266 IPR011990 GO:0005515
Adu08g00870 703 Pfam PPR repeat 120 146 IPR002885 -
Adu08g00870 703 TIGRFAM PPR: pentatricopeptide repeat domain 148 175 IPR002885 -
Adu08g00870 703 Pfam FAR1 DNA-binding domain 276 362 IPR004330 -
Adu08g00870 703 MobiDBLite consensus disorder prediction 561 582 - -
Adu08g00870 703 Gene3D - 598 676 - -
Adu08g00870 703 ProSiteProfiles Zinc finger SWIM-type profile. 429 460 IPR007527 GO:0008270
Adu08g00870 703 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 116 226 - -
Adu08g00870 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 176 IPR002885 -
Adu08g00870 703 PANTHER - 116 226 - -
Adu08g00870 703 Pfam Ribosomal protein 60S L18 and 50S L18e 617 676 IPR021131 -
Adu08g00870 703 Pfam PPR repeat family 147 192 IPR002885 -
Adu08g00870 703 SMART 26again6 435 462 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00870 Adu-Chr8 16220031 16225993 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00870 623 676 Cytoplasmic Ribosomal Protein Gene Family AT3G05590 75.926 8.12e-23 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Adu08g00870 FAR1 1.3e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00870 - - adu:110274800 533.872