LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu08g00859	ATGGCGATTGCAACAGAGCAACCTCAACAACAACATCAACAACAGGCTTCTTCGGAGGTTTCAGCTGGGGAGCAAAAGAGGTGGACACTTAACGATTTCGACATTGGGAAACCGCTTGGAAGGGGGAAATTCGGCCATGTCTATTTGGCCAGGGAAAAGAGAAGTAATCATATTGTTGCTTTGAAAGTACTCTTTAAGAGCCAGTTGCAACAGTCCCAAGTTGAGCATCAGCTTCGGCGAGAAGTGGAGATTCAGAGTCATCTCAGACATCCTCACATCTTACGCCTTTACGGCTACTTTTATGATCAGAAACGAGTTTACTTGATTTTGGAGTATGCACCTAAAGGTGAACTATACAAAGAATTGCAGAAATGCAAATATTTCAGTGAAAGACGTGCAGCTACTTATGTTGCATCATTGGCCCGAGCCCTGATATATTGCCATGGAAAGCATGTAATACATAGGGATATTAAACCAGAGAACCTCCTTATGGGAGCTCAGGGTGAACTGAAGATAGCAGATTTTGGGTGGTCAGTGCACACCTTCAACCGAAGGCGAACCATGTGTGGCACACTGGATTACCTTCCACCTGAGATGGTGGAGAGTATAGAACATGATGCTAGCGTGGATATATGGAGTCTTGGTGTCCTGTGCTATGAGTTTCTATATGGAGTCCCCCCTTTTGAGGCTAAAGAACATTCTGATACTTATAGGAGAATTGTACAAGTGGATCTCAAGTTCCCCCCAAAACCCATTGTGTCTTCTGCTGCAAAGGACCTCATCAGTCAGATGCTGGTCAAGGACTCTTCTCAACGTCTACCTTTACACAAACTTCTTGAACACCCTTGGATTGTTCAGAATGCGGAGCCCTCTGGTTGTGAAGCTTCGTTTGGTCGAACCGCACGGAGACGGCGGTACACGACGGAGGAGAAGGCGGGGTTGAACGGCGCGGAAGCAGAGATCGAGATCTGGCTGTCTCGAGGTTCAAATAAGGGAAGAAAATGGACCACCCAGGACAACGAGATTCACAAGTACGCTTTGTCGCCAAATGGGTTTGTGGAGCCTAGCTACGAGTTTTCATCTAATTTTGACCGAGTCCATGCGTCGCAGGATGCTGATGATGGAATGAGCGGCGAAACCGTGCCGGTAGAGGAAGTAGAAGCGATGGATTCGTCCACCGCAGATGCGGACATAGATGCAGAAGCAGCAGTGAGGATTGTTGAAGGGATAGGGTCCTTTGGCGCAATTGAATTTTCTTCCCTAACAGCCAAGGACATGCTGACAACGGAGTTCACAAGCTTACAGGCAGCCTATGACTACTACAACGAATTTGGTCGCATGAAGGGATTCTCGGTCAGGAGGTCCAAGGTGGGTCGCAGAACAAAGCAGGGGGCGGAGGGCGAAATAATTTGGCAGGTATTCGTGTGCTCTAGGGAAGGAGAGCGCGACGGGAAACACATGCATCGGGAAGACAGGAAGAAGGATCCTCGACCGATCacgcggtgtgggtgtgaagcccggaataaggtccacgctgatgatgctagcgagcgatggtacaatctgagggagtttgttgagcacttccaacactatttagagttcatgaggaggagAGAACTAGTGGCAGACTACAAGTCTGCGTATGGAGAGCCTGTTGTGAAGACGAAACTCGAGGCTATTGAGCAGTTCGCTGCAACAGTTTATACAAAAGAGGTTTTCGAATTGTTTCGGGAGGTGCTGATGCTGGCCAGCAACGTTAGAGTTGTGTCCACCAAGAGGACGAGCACTTGTGTTTTGTTCAAAGTTGCAATGTACTGCAAGCAGAGATCATGGGCCGTGTCGTGGGCCGAGGAAGACGACGAAttcagctgttcttgtcagcggatggagtcctttgggcttccttgtgtccacatggttggggttatggtttatctgaacatgacagctatccccaaaggcctaatacttgaccggtggacaaagagggctaagCAACCGCGTGCACACTGCGACGGAACTCGTGTTGGGGAGATCCCAGAAGCGGCATACATGAGCATACACGCGGTGATGCTGGATGATTGTAGGGAGCTGGTGAGCCTGTCTTGCCGGTTTTTCGAGGACTACGTTGACGTGAAAACAAGGTTGGCAAAGGAGTGTCAATCCCTGCGGGACAAATATCGCCAAAGGTTGGGTGTTGCTGAGGAGGTCAGCAGGGTGTCTGTTCGGGACCCGATGCGGCCAAGGTACAAAGGATGCGGTCGAAGAGTTGTCACCTCCCGGGGAAAGTTTCGCCGTGTTCAAAGGTGTCGACTGTGTGGAAAGGGCGAACACAATTCTTGCAAGTGTCAACAATCGAGTACGGGGGAGAACATCGATAGTTTTGAGGCTGACGCGGCTTACGAAAGCATGAAGGCAGGAGAGGGGGTGAGGAGTACTACAAATTTGAGTGAGCTGGCTGAACCGTTCTTTTTGGCGGTTACGCATTGA	2493	0.4452	MAIATEQPQQQHQQQASSEVSAGEQKRWTLNDFDIGKPLGRGKFGHVYLAREKRSNHIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHPHILRLYGYFYDQKRVYLILEYAPKGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLMGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESIEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSDTYRRIVQVDLKFPPKPIVSSAAKDLISQMLVKDSSQRLPLHKLLEHPWIVQNAEPSGCEASFGRTARRRRYTTEEKAGLNGAEAEIEIWLSRGSNKGRKWTTQDNEIHKYALSPNGFVEPSYEFSSNFDRVHASQDADDGMSGETVPVEEVEAMDSSTADADIDAEAAVRIVEGIGSFGAIEFSSLTAKDMLTTEFTSLQAAYDYYNEFGRMKGFSVRRSKVGRRTKQGAEGEIIWQVFVCSREGERDGKHMHREDRKKDPRPITRCGCEARNKVHADDASERWYNLREFVEHFQHYLEFMRRRELVADYKSAYGEPVVKTKLEAIEQFAATVYTKEVFELFREVLMLASNVRVVSTKRTSTCVLFKVAMYCKQRSWAVSWAEEDDEFSCSCQRMESFGLPCVHMVGVMVYLNMTAIPKGLILDRWTKRAKQPRAHCDGTRVGEIPEAAYMSIHAVMLDDCRELVSLSCRFFEDYVDVKTRLAKECQSLRDKYRQRLGVAEEVSRVSVRDPMRPRYKGCGRRVVTSRGKFRRVQRCRLCGKGEHNSCKCQQSSTGENIDSFEADAAYESMKAGEGVRSTTNLSELAEPFFLAVTH	830

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu08g00859	830	Pfam	Protein kinase domain	35	284	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Adu08g00859	830	Gene3D	Transferase(Phosphotransferase) domain 1	117	345	-	-
	Adu08g00859	830	CDD	STKc_Aurora	32	285	-	-
	Adu08g00859	830	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	152	164	IPR008271	GO:0004672\|GO:0006468
	Adu08g00859	830	ProSitePatterns	Protein kinases ATP-binding region signature.	39	62	IPR017441	GO:0005524
	Adu08g00859	830	PANTHER	SERINE/THREONINE-PROTEIN KINASE AURORA-1	1	293	-	-
	Adu08g00859	830	SMART	serkin_6	33	284	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Adu08g00859	830	Gene3D	Phosphorylase Kinase; domain 1	21	116	-	-
	Adu08g00859	830	PANTHER	SERINE/THREONINE-PROTEIN KINASE IAL-RELATED	1	293	IPR030616	GO:0004672
	Adu08g00859	830	SMART	26again6	623	650	IPR006564	GO:0008270
	Adu08g00859	830	ProSiteProfiles	Protein kinase domain profile.	33	284	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Adu08g00859	830	Pfam	SWIM zinc finger	624	647	IPR007527	GO:0008270
	Adu08g00859	830	Pfam	FAR1 DNA-binding domain	439	533	IPR004330	-
	Adu08g00859	830	SUPERFAMILY	Protein kinase-like (PK-like)	21	288	IPR011009	-
	Adu08g00859	830	MobiDBLite	consensus disorder prediction	1	24	-	-
	Adu08g00859	830	ProSiteProfiles	Zinc finger SWIM-type profile.	612	648	IPR007527	GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu08g00859	Adu-Chr8	16007197	16014113	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu08g00859	24	290	CBL-interacting serine-threonine protein kinases	AT5G10930	35.401	2.15e-50	182

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	Aur	Adu08g00859		Pkinase	1.2e-71	CL0016
	TF	FAR1	Adu08g00859		Pkinase	1.2e-71	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu08g00859	K08850		-	gmx:100775451	558.525