Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00813 ATGGTGTGGGATGAAGGTAAGTCAAAGAGGAAAAAAGGTGAATTTGACAGAATGGAAGCTACAAATATGAGTGTGATAGTGGAAAATGAGGAACAAGTGGAGCTATCATTCACAAGAATGTGGAATTCTTCTCTTCAGGGATTGTATCCCCCACTCAACATTGATAAAAGGTTCCATTACATGGTGGTAGCAGGGGACAGACAGAGATTTATGCCTCTTCCTGATGATAGAGAAGAAGGAAGAGGCCAAGTTCTTGCTTATCCTGAAGCTGTCTTGCTTGTCAATCCTATTGAGCCTCAATTCAAAGGAGAGGTGGATGACAAGTATCAATATTCATGTGAGAGCAGAAACAACGAAGTTCATGGTTGGATATCCATGGATCCACCCAAATCCACCGGCTTCTGGATCATCACCCCAAGCAATGAGTTCCGATCCGGCGGCCCCCTCAAACAATATCTCGCTTCTCACGTCGGCCCCACTTCCTTATCCGTATTTCATAGCACACACTATTCCGGGGTAGATCTGATAATGAGGTTTAGGCCCAATGAAGCCTGGAAGAAAGTATATGGGCCCATATTTATATATCTTAATTCACTCTCTAATGGAGAAAGCCCAACAGGGCTCTGGGACGACGCCAGACAACAGATGGTGAATGAAATTGAAAGCTGGCCCTATAAGTTTCCAGCTTCAGAGGATTTTGTGAAAGCTGAGCAAAGGGGTCAAGTTGAAGGAAGATTGCTTGTCCGTGACAGGTACATGAGTGATGCATTCATCCCAGTTAGCAGTGCTTCTGTGGGATTAGCTTCTCCAGGAGAGCCTGGCTCTTGGCAAAGGGAATCCAAGGGTTATCAATTTTGGACCATTACTGATGATAAAGGCTATTTCTCAATTACTAACATACTCCCTGGGAAATATAATGTCTACTCCTGGGTCAAAGGATACATTGGTGACTATAAATATGATAAAGTCATTAACATAACTTCAGGGAGTGAAGTTAATGTGGGTGAAATTGTTTATGAGGCACTAAGAGAAGGTGCTACTTTGTGGGAAATAGGTATACCTGATCGTTCTGCTGCTGAGTTCTATGTTCCTGATCCTAACCCCAAATACATTAACAGAATTTATGTCAACCATACAGATAGGTATAGGCAATATGGGTTGTGGGAGAGATATGCTGATTTGTATCCAAAAGAAGACTTAGTATACAATGTTGGCACAAGTGACTATACAAAAGATTGGTTCTTTGCTCAGGTTAACAGGAAGAAGGGAAATAAGACATACCAAGCAACCACTTGGCAAATTAATTTCAATTTGGAAAATGTGAATGCCAATGGAACTTACAAATTGCGAGTGGCTCTGGCCTCTGTACATTATGCCGAGTTACAGATTCGGGTGAAGAATTCATCAGAAGCAAATCCACCATTATTTACAAGTGGAGTTATTGGATCAGAAAACACCATAGCTAGACATGGAATTCATGGGTTCTATTGGCTTTTCAACGTTGATATAAAAGGCACTCTTCTTGCACAGGGAAATAATTCAATCTTTTTTTCACAACCCAATAATTCAAGTCCCTTTCAAGGAATTTTGTATGATTATATTCGTCTAGAAGCACCACCCCATCACACAAATTTCACACCAAAATTAAATATTCTTCCAAATTAA 1665 0.409 MVWDEGKSKRKKGEFDRMEATNMSVIVENEEQVELSFTRMWNSSLQGLYPPLNIDKRFHYMVVAGDRQRFMPLPDDREEGRGQVLAYPEAVLLVNPIEPQFKGEVDDKYQYSCESRNNEVHGWISMDPPKSTGFWIITPSNEFRSGGPLKQYLASHVGPTSLSVFHSTHYSGVDLIMRFRPNEAWKKVYGPIFIYLNSLSNGESPTGLWDDARQQMVNEIESWPYKFPASEDFVKAEQRGQVEGRLLVRDRYMSDAFIPVSSASVGLASPGEPGSWQRESKGYQFWTITDDKGYFSITNILPGKYNVYSWVKGYIGDYKYDKVINITSGSEVNVGEIVYEALREGATLWEIGIPDRSAAEFYVPDPNPKYINRIYVNHTDRYRQYGLWERYADLYPKEDLVYNVGTSDYTKDWFFAQVNRKKGNKTYQATTWQINFNLENVNANGTYKLRVALASVHYAELQIRVKNSSEANPPLFTSGVIGSENTIARHGIHGFYWLFNVDIKGTLLAQGNNSIFFSQPNNSSPFQGILYDYIRLEAPPHHTNFTPKLNILPN 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00813 554 Gene3D - 93 210 IPR014718 GO:0030246
Adu08g00813 554 CDD RGL4_C 349 537 - -
Adu08g00813 554 Pfam Rhamnogalacturonate lyase family 56 105 IPR010325 -
Adu08g00813 554 SUPERFAMILY Galactose-binding domain-like 345 537 IPR008979 -
Adu08g00813 554 Gene3D - 344 537 - -
Adu08g00813 554 PANTHER RHAMNOGALACTURONATE LYASE B-LIKE PROTEIN 1 58 - -
Adu08g00813 554 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 57 538 - -
Adu08g00813 554 PANTHER RHAMNOGALACTURONATE LYASE B-LIKE PROTEIN 57 538 - -
Adu08g00813 554 CDD RGL4_M 238 337 IPR029413 -
Adu08g00813 554 Gene3D - 234 335 - -
Adu08g00813 554 Pfam Polysaccharide lyase family 4, domain II 262 333 IPR029413 -
Adu08g00813 554 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 58 - -
Adu08g00813 554 SUPERFAMILY Starch-binding domain-like 235 335 IPR013784 GO:0030246
Adu08g00813 554 Pfam Polysaccharide lyase family 4, domain III 347 536 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00813 Adu-Chr8 14882481 14903105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00813 13 539 Polysaccharide Lyase AT1G09890 60.924 0.0 713
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00813 K18195 - gmx:100786488 864.374
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00813 08 14882481 14903105 Adu08g00813 08 14882481 14903105 ECH