Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00741 ATGTCAACCACCCATACCCAAACACGCCACCATGGCCTTCTCGCCGCGATGCTGCTCTTCCTCCACCTGCTCCTTCCGCCGCCTCATACCGCCGCGCAGGCCGTTAACTCGCTGCCGCCTCCGCCGCCAGATGCCATCTCCAAGGTGAAGTTCGACAAGTCCATGGCCGTCGTCCTGGTCATCCTCGTCATCGTGTTCTTCGCCCTCGGCTTCCTCTCCGTGTACACGCGCCAGTGCGCGGAGCGTAGGATGAGAGCGAGGTTCGACCTCACGTTCCCCCTCGCCGGAAGCCACCGCCGGCAGCGTGGTTTGGACCGGGAGATCATCGAGACGTTCCCGACGTTTGTTTACTCCGCCGTGAAGACACAGAAGATAGGTCGTGCCACGCTAGAATGCGCCGTGTGCCTCAACGAGTTCAACGACGACGAAACGCTGCGTTTAATTCCAAAGTGCAGCCACGTGTTCCACCCTGATTGCATTGACGCATGGCTCGCTAACCACTCTACCTGCCCCGTTTGCCGCGCCAACCTCTTCCCCTCCGACAACAACAATAACGATAACGGCACCTTCGTTGCCGTTCAGATCCCTGATCCTGAGTCCAACGGTTCACATAGATCCGAAATTGCACAGATTAATAACGGTAACGATAACGGCGGAGGAGGAACGGCAACGGTAACGGAGTCTCCGAAGATGGATAGTTCAGTTAATCAGAGGCGTACGCCGTTACGGTCATGGTCAACGGGGTTTAGGATTGGGAATTTGTTTCCAAGGTCGCACTCGACGGGTCACTCGCTGGTCCAACCGGGGGAAAGCTTGGAGCGGTTTACGCTGAGGCTGCCGGAGGAGGTGCGAAACCGGCTGCTTATGAGTTCGACGCCATGTCAGACGACAAGCAACGGCGGCGCGGCGTTCTCTCGAGAGAGCAGCGTGAGGAGAGGGTTTAGAACCCGGAGTGTGGGTCCCGGGAGGGGCTACTTGCAGTATGAACGGTTTGGCGGGGTGGAGCGGCGAGGGTTCAATTGGACGCCGGCGTTTTTTAGTAGGGCCAGTTCTACCCGGTCTCCGGGGAACGGTTCGACGGCGGAGGAGAAGAAGGAGGTGGCGGTGGAAATTGGTGAACGGTCTTCGGATCGGTTATTTGCAGGTGGTGAGAGTTAG 1158 0.5838 MSTTHTQTRHHGLLAAMLLFLHLLLPPPHTAAQAVNSLPPPPPDAISKVKFDKSMAVVLVILVIVFFALGFLSVYTRQCAERRMRARFDLTFPLAGSHRRQRGLDREIIETFPTFVYSAVKTQKIGRATLECAVCLNEFNDDETLRLIPKCSHVFHPDCIDAWLANHSTCPVCRANLFPSDNNNNDNGTFVAVQIPDPESNGSHRSEIAQINNGNDNGGGGTATVTESPKMDSSVNQRRTPLRSWSTGFRIGNLFPRSHSTGHSLVQPGESLERFTLRLPEEVRNRLLMSSTPCQTTSNGGAAFSRESSVRRGFRTRSVGPGRGYLQYERFGGVERRGFNWTPAFFSRASSTRSPGNGSTAEEKKEVAVEIGERSSDRLFAGGES 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00741 385 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Adu08g00741 385 Pfam Ring finger domain 131 174 IPR001841 -
Adu08g00741 385 MobiDBLite consensus disorder prediction 347 385 - -
Adu08g00741 385 MobiDBLite consensus disorder prediction 359 385 - -
Adu08g00741 385 MobiDBLite consensus disorder prediction 211 239 - -
Adu08g00741 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 179 IPR013083 -
Adu08g00741 385 SUPERFAMILY RING/U-box 126 187 - -
Adu08g00741 385 PANTHER RING-H2 FINGER PROTEIN ATL11 14 300 - -
Adu08g00741 385 SMART ring_2 132 173 IPR001841 -
Adu08g00741 385 CDD RING-H2_PA-TM-RING 131 174 - -
Adu08g00741 385 PANTHER RING FINGER DOMAIN-CONTAINING 14 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00741 Adu-Chr8 13427585 13429780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00741 7 313 Rapid Response to Elicitors AT3G05200 41.693 4.48e-61 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00741 K10664 - gmx:100815982 350.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00741 08 13427585 13429780 Adu08g00741 08 13427585 13429780 ECH
Adu07g01933 07 61416219 61417319 Adu08g00741 08 13427585 13429780 PCT