Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00688 ATGGCAGCAATGATGGATTTCTACAGCAACACACAGCTTCAGTACTCAGATCCCTTTAGAGGTAGTGAGTTAATGGAAGTTCTTGAACCTTTTATTAAGAGTTCTTCCACAACACCCTCACCTTCACCTTCAACTTCTCCTTCTCCTCCTTCTTCAACTTCATCTCCTTCTACCTCTTACCCTTCTTCTTTCTACTTCCAATCTTCTTCTCCTTCTCCTTGTCTCCCTCCCCAACAACCCTGTTTCTTGTCCAACGGTTTACCCATGACCCAAAACTTGTTGGGATTCGGGACACAACCAACTTCAACTACTTCAACAACTTCTCTTCTTGGACTGAACCACCTAACCCCGTCACAGATCAATCAGATCCAGGCCCAAATACAGATCCAGGCCCAACCATGGCAAACACAGCACCTCAACTCCTGTGTTAGCTTCCTTGGGCCGAAGCCCATCCCGATGAAGCACGTGGGGTCAACAGCTTCAAAGCCCACGAAGCTTTACAGAGGGGTGAGGCAGAGGCACTGGGGAAAGTGGGTGGCTGAGATCAGACTCCCCAAGAACCGTACAAGGCTCTGGCTCGGAACCTTCGACACCGCAGAAGAGGCTGCTTTGGCTTACGACAAAGCCGCTTACAAGCTCCGCGGCGACTTTGCCAGACTCAACTTCCCTAACCTCCGTCACAACGGCTCCTCCGTCGGCGGTGACTTCGGCGAGTACAAGCCGCTTCACTCCTCTGTCGACGCAAAGCTTCAGGCCATATGCGAAGGCCTCGCGGAGATGCAGAAGCAGGGAAAGACGGAGAAGACGAAGCGGTCCAAAGCAGGCGCTGCTGGTTCCAAAGCTGCGGTTTCTAAGCCGGCGGCGGAGGACGTGAAGGCTTGTTGCAAGGTGGAAGAAGAAGCCGCAGCGTCGCCGCCCGAGAGCGATGGTGGTTCGTCGGAGGATTCTTCGCCGCTGTCAGATCTGACGTTTGGTGATGTTGATGACGTTGGTGATAATTTTAATCTTCAGAAGTTCCCTTCGTATGAGATTGATTGGGATTCTCTGTGA 1050 0.521 MAAMMDFYSNTQLQYSDPFRGSELMEVLEPFIKSSSTTPSPSPSTSPSPPSSTSSPSTSYPSSFYFQSSSPSPCLPPQQPCFLSNGLPMTQNLLGFGTQPTSTTSTTSLLGLNHLTPSQINQIQAQIQIQAQPWQTQHLNSCVSFLGPKPIPMKHVGSTASKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSSVGGDFGEYKPLHSSVDAKLQAICEGLAEMQKQGKTEKTKRSKAGAAGSKAAVSKPAAEDVKACCKVEEEAAASPPESDGGSSEDSSPLSDLTFGDVDDVGDNFNLQKFPSYEIDWDSL 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00688 349 Pfam AP2 domain 167 215 IPR001471 GO:0003700|GO:0006355
Adu08g00688 349 SMART rav1_2 166 229 IPR001471 GO:0003700|GO:0006355
Adu08g00688 349 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 348 - -
Adu08g00688 349 CDD AP2 165 225 IPR001471 GO:0003700|GO:0006355
Adu08g00688 349 MobiDBLite consensus disorder prediction 30 64 - -
Adu08g00688 349 MobiDBLite consensus disorder prediction 262 326 - -
Adu08g00688 349 Gene3D AP2/ERF domain 166 224 IPR036955 GO:0003700|GO:0006355
Adu08g00688 349 SUPERFAMILY DNA-binding domain 166 224 IPR016177 GO:0003677
Adu08g00688 349 ProSiteProfiles AP2/ERF domain profile. 166 223 IPR001471 GO:0003700|GO:0006355
Adu08g00688 349 PRINTS Ethylene responsive element binding protein signature 167 178 IPR001471 GO:0003700|GO:0006355
Adu08g00688 349 PRINTS Ethylene responsive element binding protein signature 189 205 IPR001471 GO:0003700|GO:0006355
Adu08g00688 349 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 4 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00688 Adu-Chr8 12492331 12494332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00688 1 349 AP2-EREBP Transcription Factor Family AT1G78080 51.622 1.99e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Adu08g00688 AP2 7.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00688 K09286 - gmx:100800478 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00688 08 12492331 12494332 Adu08g00688 08 12492331 12494332 ECH
Adu07g01858 07 56629322 56631236 Adu08g00688 08 12492331 12494332 PCT