Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00671 ATGGGGCGTGTGAAATTGGAGATAAAAAGAATAGAGAATACCACAAATCGACAAGTTACATTCTCAAAACGTAGAAATGGTCTCATCAAGAAAGCATATGAGTTATCCATCCTTTGTGACATTGATATTGCACTTATCATGTTCTCTCCCTCTGGTCGTCTCAACCATTTCTCTGGCAAAAGGAGGATTGAAGATGTTTTCACACGTTACATTAATCTTCCTGATCAAGAAAGAGATAAGTATTATTTGCTCCGGACCCTTCAACAATTGAGGAATGAGAATGACATAGCTCTTCAACTAGCCAATCCGGGAGTCATTAACTCTGAGATTGAAGAACTCCAACAAGAAGTTAGTAGGCTACATCAACAACTTCAACTGGCTGAAGACCAGATAAGGGCATATGAACCCGATCCATTAAAGATGACATCTATGGAGGAGCTGGAATCTGGTGAAAAGAATCTTATGGAGACTTTGACTCGCGTCATGCAAAGAAAGGAATATCTATTGAGCAGCCATTTGCCTACTTATGATCCATCAACTATTCAGGGGATGGCATCAACTTTTGAGAATGTCGGATGGTTGCAAAATGGCACCCAAAACCACAACCAAATATTTGATGCATCTACTCCTTTGGATCCACTCAGGGATTTGCAATCGTCAATTTATGATCCATTTCCACAAGGAACAAATTCACAAAGCGATACAAGAAACATTGGAGAGTGTCACGTGACAAATCAGAATGACACGTGGCCTCAAGGATACACGTTATACTCTCATATGCAGCATGAGATGGTGGGACCTGACGTGTCCAATATGATGACGACACATGGACAAATGAATCTTCCAATCACAGCCTCCAATTTGCAACCATCCAACAATGAAGCCGGAGAATATGACTGTAAACCTCAAAATCAACTTAACACACAATAA 930 0.4043 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLNHFSGKRRIEDVFTRYINLPDQERDKYYLLRTLQQLRNENDIALQLANPGVINSEIEELQQEVSRLHQQLQLAEDQIRAYEPDPLKMTSMEELESGEKNLMETLTRVMQRKEYLLSSHLPTYDPSTIQGMASTFENVGWLQNGTQNHNQIFDASTPLDPLRDLQSSIYDPFPQGTNSQSDTRNIGECHVTNQNDTWPQGYTLYSHMQHEMVGPDVSNMMTTHGQMNLPITASNLQPSNNEAGEYDCKPQNQLNTQ 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00671 309 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Adu08g00671 309 Coils Coil 110 130 - -
Adu08g00671 309 Pfam K-box region 109 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Adu08g00671 309 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Adu08g00671 309 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Adu08g00671 309 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Adu08g00671 309 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 260 - -
Adu08g00671 309 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 260 - -
Adu08g00671 309 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Adu08g00671 309 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Adu08g00671 309 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Adu08g00671 309 MobiDBLite consensus disorder prediction 282 309 - -
Adu08g00671 309 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Adu08g00671 309 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Adu08g00671 309 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00671 Adu-Chr8 12075856 12079413 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00671 1 301 Type I MADS-box Gene Family AT1G22130 54.985 7.31e-112 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Adu08g00671 K-box 3.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00671 - - adu:107460753 614.379