Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00650 ATGCCTCGCCGTAGTGCTCCGTCCTCATCATTGCCGCCGAGGCCAACACCAATTCCCGCCAAATTCTGGCGCGCATGTGCTGGAATCTCTGCGAAGGCACCAGTAGTGAACTCTAGGGTTTACTACTTTCCACAGGGACACATCGATCAAGCTGCTTCGCAACCGCGAAACCTTTCACCTCTGGTTTACTCCAGGCCGGTCATCCCTTGCCGTGTCGCCGCCGTCAACTACTTCGCGGACCCTAACACCGACGAGGTCTTCCTCAAGATTCTTCTTGTTCCTGTCACCGATGGATCCGCTCAAGATTTTCTTCCACCTGCCGTCGCCGCCGAAGGCAACAGTGGCAACGGCAATGGCGACGATGAAGAGGTTGCGTCGTACGCCAAGATTCTCACGCGGTCCGATGCGAATAATGGCGGAGGGTTTTCGGTGCCGAGATCCTGTGCGGACTTGGTCTTCCCGCCGTTGAACTTTGAAGAGGACCCGCCGGTGCAGAATCTTAGAATAACCGACCTACACGGCGCCGTATGGGAGTTTCGCCACATCTACCGCGGGACTCCGAGACGGCACCTCTTCACATCCGGCTGGAGCAAGTTCGTTAACAGTAAGAAGATTATCTCCGGCGATACTGTGGTTTTCATGAAGGACTCCGATGGGAGGATGTTCGTCGGGCTCCGCCGCAATATGTCGCTGGACGACGATATCGCAGATGGTGGATTGGATTGGTTTGCAGCTATGGACGAGGGCGAAGGAGAAAAAGAAGAGGAAGAAAAAGAAGAGGTGATGACGGAGGGATTTGCAAGAAACGGGAAGGGGAGAGTGACTTCGACATCGGTGGCAGAGGCGATGGAGCTGGCAGCTCAAAACAAGCCGTTCGAAGTTGTTTACTATCCAAGCGTGGGTTGGGGGGAGTTTGTGGTGAAGGCAGAGGACGTGGACGTGATGATTAATGGTATTCCTTGGAGAGTTGGGATGAGAGTGAAAATGGGCAGAGAGAACTATGATTCGTCACGGATGGATTGGTTTCAGGGGACTGTTTCTGGTGTTACTGTTCCCGGTAAAGATCAACCATGGAGTGGTTCTCCTTGGCGCATGCTTCAGATTACATGGGATGAATCCGAAATCTTGAAGAATGTAAATCCTGTCAGTCCATGGCAGGTGGAACTTCTTTCTGAGACACTTTTACTTCCTCAAGTATTTCCCCCAACAAAGAGGTTCAGAACTAATGAAATGGGAGAATCCTCCTCTTCCATTACAAGATTTTCTATTCCTGATTCCACAATGGGAGTGCTGAATCAAACATTGTTGAGTAATTATGATACTTTTTTTTCTGCTAGCATGCAGGGAGCCAGGCATCCTCTATTTTCTGCAGCTACTTATCCCCTCTTTCCGATTGATCCTTCTCTGTCTATTGATAGTTCCTTTGAGAATAATATTGTACCAAAGTTAAATGTTATGTTGCCAAAACTTAACATTGACACTCATAAGCCTAAAAACTTATCACCACATAGCAAGTCTAGTTTGACTCCCATTGATGAGACCCCTAACAGCAACTTAACCAAATCTGGAGCTACTTCATTTCAGTTATTTGGTTGTACTATTCAAACAGATCAA 1614 0.4888 MPRRSAPSSSLPPRPTPIPAKFWRACAGISAKAPVVNSRVYYFPQGHIDQAASQPRNLSPLVYSRPVIPCRVAAVNYFADPNTDEVFLKILLVPVTDGSAQDFLPPAVAAEGNSGNGNGDDEEVASYAKILTRSDANNGGGFSVPRSCADLVFPPLNFEEDPPVQNLRITDLHGAVWEFRHIYRGTPRRHLFTSGWSKFVNSKKIISGDTVVFMKDSDGRMFVGLRRNMSLDDDIADGGLDWFAAMDEGEGEKEEEEKEEVMTEGFARNGKGRVTSTSVAEAMELAAQNKPFEVVYYPSVGWGEFVVKAEDVDVMINGIPWRVGMRVKMGRENYDSSRMDWFQGTVSGVTVPGKDQPWSGSPWRMLQITWDESEILKNVNPVSPWQVELLSETLLLPQVFPPTKRFRTNEMGESSSSITRFSIPDSTMGVLNQTLLSNYDTFFSASMQGARHPLFSAATYPLFPIDPSLSIDSSFENNIVPKLNVMLPKLNIDTHKPKNLSPHSKSSLTPIDETPNSNLTKSGATSFQLFGCTIQTDQ 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00650 538 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Adu08g00650 538 MobiDBLite consensus disorder prediction 494 522 - -
Adu08g00650 538 Pfam Auxin response factor 282 367 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Adu08g00650 538 SUPERFAMILY DNA-binding pseudobarrel domain 123 233 IPR015300 -
Adu08g00650 538 PANTHER AUXIN RESPONSE FACTOR 15 538 - -
Adu08g00650 538 Gene3D - 124 229 IPR015300 -
Adu08g00650 538 Gene3D - 321 394 - -
Adu08g00650 538 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677
Adu08g00650 538 CDD B3_DNA 126 227 IPR003340 GO:0003677
Adu08g00650 538 SMART B3_2 127 229 IPR003340 GO:0003677
Adu08g00650 538 MobiDBLite consensus disorder prediction 501 522 - -
Adu08g00650 538 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 538 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00650 Adu-Chr8 11685356 11687325 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00650 22 538 B3 DNA Binding Superfamily AT1G77850 43.173 6.86e-130 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Adu08g00650 B3 2.4e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00650 - - aip:107607845 1004.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00650 08 11685356 11687325 Adu08g00650 08 11685356 11687325 ECH