Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00626 ATGGCAGCGGAGACTCAGAGATCCACGGGCACAGTGAAATGGTTCAACGCACAGAAGGGTTTCGGATTCATAGCTCCCGACGATGGCGGCGAGGATCTCTTCGTCCACCACTCTGCCATTCGATCCGACGGTTACCGTACACTCTCCGAGGGCCAGCCGGTTGAGTTTGCCGTTGATTACGGCGATGCCGGCAGAACTAAGGCCGTCGATGTCTCCTCCATGACTAGATCTCGCCCGTTTGGTGGTGGCTTTCGAGGTGGAGGGGGAAGAGGAGGAAGAGGAAGGGGTGGTGGAAGGTTCGGTGGGCGTTATGGCGGCGGTGAAGGCCGGGGCGACGGTGACGGTTACAGTTACGGAAGAGGTGGAGGCGGTGGTCGTAGAGGAGGAGGTTATGGCGGTGGAGGAGGCCCTGAGTGTTACAATTGTGGACGAACAGGTCACTTGGCGAGAGATTGTTACCAGGGACAGGGTGGTGGAAACCGGAGACGAGGCGGCGGCGGCGGTGGTGGTGGAGGTTGTTTTAACTGTGGGGAGAAAGGGCATTTTGCGAGAGAATGTCCGAACGCTGAAAATTGA 576 0.5833 MAAETQRSTGTVKWFNAQKGFGFIAPDDGGEDLFVHHSAIRSDGYRTLSEGQPVEFAVDYGDAGRTKAVDVSSMTRSRPFGGGFRGGGGRGGRGRGGGRFGGRYGGGEGRGDGDGYSYGRGGGGGRRGGGYGGGGGPECYNCGRTGHLARDCYQGQGGGNRRRGGGGGGGGGCFNCGEKGHFARECPNAEN 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00626 191 CDD CSP_CDS 9 71 IPR002059 GO:0003676
Adu08g00626 191 SUPERFAMILY Nucleic acid-binding proteins 6 72 IPR012340 -
Adu08g00626 191 Pfam Zinc knuckle 172 188 IPR001878 GO:0003676|GO:0008270
Adu08g00626 191 Pfam Zinc knuckle 138 152 IPR001878 GO:0003676|GO:0008270
Adu08g00626 191 ProSiteProfiles Cold-shock (CSD) domain profile. 7 73 IPR002059 GO:0003676
Adu08g00626 191 SMART csp_8 9 74 IPR011129 GO:0003676
Adu08g00626 191 ProSiteProfiles Zinc finger CCHC-type profile. 139 152 IPR001878 GO:0003676|GO:0008270
Adu08g00626 191 PRINTS Cold shock protein signature 10 25 IPR002059 GO:0003676
Adu08g00626 191 PRINTS Cold shock protein signature 31 40 IPR002059 GO:0003676
Adu08g00626 191 PRINTS Cold shock protein signature 46 64 IPR002059 GO:0003676
Adu08g00626 191 Gene3D - 135 162 - -
Adu08g00626 191 Gene3D - 163 191 - -
Adu08g00626 191 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 189 - -
Adu08g00626 191 MobiDBLite consensus disorder prediction 79 113 - -
Adu08g00626 191 Gene3D - 1 72 IPR012340 -
Adu08g00626 191 ProSitePatterns Cold-shock (CSD) domain signature. 21 40 IPR019844 -
Adu08g00626 191 SMART c2hcfinal6 138 154 IPR001878 GO:0003676|GO:0008270
Adu08g00626 191 SMART c2hcfinal6 172 188 IPR001878 GO:0003676|GO:0008270
Adu08g00626 191 Pfam 'Cold-shock' DNA-binding domain 9 72 IPR002059 GO:0003676
Adu08g00626 191 SUPERFAMILY Retrovirus zinc finger-like domains 128 189 IPR036875 GO:0003676|GO:0008270
Adu08g00626 191 ProSiteProfiles Zinc finger CCHC-type profile. 173 188 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00626 Adu-Chr8 11260398 11261442 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Adu08g00626 CSD 3e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00626 - - jre:109013657 172.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00626 08 11260398 11261442 Adu08g00626 08 11260398 11261442 ECH