Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00617 ATGTCTCTGAGTCCACCAAGAGAAAGAAGCAACAACAATAACAATGGATTCCAACTATACTGGTGCTTCCAGTGCAACCGCATGGTGCGAGCCGCACACGATAACAACCCATCCTGTCCACGCTGCTTTGGCCAATTCATCCAAGAAATCAACATGCCAACCCCAAGACTCTTTCTCGATTTTACCCCTAACACTAACGACCCTTCTCCACAGCCCCGTCTTCTAGAAGCTCTCTCCCTCATGCTCGATCCCGCCTTCCAACAACCCCGTCGCCGCCCCCGCATCCGCATCCGCCGCCGCCAACCTTCCGACACATCCGACCCCCACCCTACAACTCGTCCCCGAACCTGGATCATCGTCCATCCCATCGGTGCTTCCCCCGAGGAGCTCGAAGCCATGGTTCCGCCGCCGCGCCGCGACCGTCCGGTGGTGCCGATCGGGGTGGACTCCAGGGACTACTTCCTTGGTCCGGGACCGAACGAACTGATCGAGCAGATTACCGAGAATGATAGGCCGGGTCCGGCGCCGGCGGCGGAGAGAGCGATCAGAGGGATACCGAGGGTGAAGATAGAAGCACAGCATCTGAAAGAGAATTCTCAGTGTCCGGTTTGTCAGGAAGAGTTTGAGGTTGGTGAAGAAGTGAGGGAGCTTCCATGTAAGCATGTTTATCACTCTGATTGCATTGTTCCGTGGCTGAGGCTTCATAATTCTTGCCCCGTTTGCCGCCATGAGGTGCCCGATGGTGATGATGATGATGAATGTGTTGCTGAGGGGAGGTTTCAGAGGTGCTTGAGGTGGACGAGGGTTTCTTCTCTTTGGCCATTTCATCACCACCGTCGACGTGTTCATCCTGCTGATCAAGGACCAGGAGAGAATAATAACGCTACTGCTTCTCTCAGGGCACCTAATCCAAGACGCTCTTGCACCATTCTTTAA 936 0.5481 MSLSPPRERSNNNNNGFQLYWCFQCNRMVRAAHDNNPSCPRCFGQFIQEINMPTPRLFLDFTPNTNDPSPQPRLLEALSLMLDPAFQQPRRRPRIRIRRRQPSDTSDPHPTTRPRTWIIVHPIGASPEELEAMVPPPRRDRPVVPIGVDSRDYFLGPGPNELIEQITENDRPGPAPAAERAIRGIPRVKIEAQHLKENSQCPVCQEEFEVGEEVRELPCKHVYHSDCIVPWLRLHNSCPVCRHEVPDGDDDDECVAEGRFQRCLRWTRVSSLWPFHHHRRRVHPADQGPGENNNATASLRAPNPRRSCTIL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00617 311 Pfam Ring finger domain 200 242 IPR001841 -
Adu08g00617 311 MobiDBLite consensus disorder prediction 289 311 - -
Adu08g00617 311 MobiDBLite consensus disorder prediction 85 114 - -
Adu08g00617 311 SMART ring_2 201 241 IPR001841 -
Adu08g00617 311 Pfam zinc-ribbon 18 50 IPR039525 GO:0061630
Adu08g00617 311 ProSiteProfiles Zinc finger RING-type profile. 201 242 IPR001841 -
Adu08g00617 311 CDD RING-H2_RNF126_like 200 242 - -
Adu08g00617 311 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 12 251 - -
Adu08g00617 311 MobiDBLite consensus disorder prediction 281 311 - -
Adu08g00617 311 PANTHER - 12 251 - -
Adu08g00617 311 SUPERFAMILY RING/U-box 182 246 - -
Adu08g00617 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 248 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00617 Adu-Chr8 11090937 11092368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00617 173 283 C3H Transcription Factor Family AT1G68180 44.828 2.56e-25 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00617 K11982 - gmx:100787399 307.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00617 08 11090937 11092368 Adu08g00617 08 11090937 11092368 ECH