Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00564 ATGGCGCCAATCATGCAATCCTCTCAGCCTTGGGTCGAAAAATACCGACCAAAACAAGTGAAAGACGTAGCTCACCAAGACGAAGTTGTTCGTGTCCTCACCAACACTCTTGAAACTGGAAGCTGCCCCCACATGCTCTTCTATGGACCCCCCGGCACCGGAAAAACAACCACTGCTCTTGCAATAGCTCACCAGCTTTTCGGGCCTGAGCTTTACAAGTCTAGGGTGCTGGAGCTCAATGCAAGTGATGACCGTGGGATTAATGTTGTTCGCACCAAGATAAAGGATTTTGCAGCCGTCGCCGTTGGTACTAATCAGCGCAAGGGTGGTTATCCTTGTCCACCATATAAGATTATTGTCTTGGATGAGGCAGATTCAATGACTGAAGATGCTCAGGCATGTTTGAATATACGAACGATGGAAACTTACTCTAAAGTTACTCGGTTCTTTTTCATATGCAACTACATCAGCAGGATCATAGAACCACTGGCTTCAAGGTGTGCAAAATTCAGGTTCAAGCCATTGTCAGAAGAGATCATGAGCAACCGAATACTGTACATTTGCAATGAAGAAGGACTCAATCTTGATGCTAAGGCTCTTTCAACCTTGAGTTCTATCTCTCAAGGAGATCTTCGTCGGGCTATCACATACTTGCAGTCAGCGGCTCGATTATTCGGATCTTCCATTTCTTCAGAGGACCTGATTTCAGTATCTGGGGTTGTTCCAGCAGAGGTAGTGGAGGCAATTCTGAAAGCATGCAAAAGTGGAAATTTTGATTCAGCCAACAAGGAAGTAAACAATTTCATTGCAGAGGGATATCCAGCCTCTCAGATACTAACTCAGTTATTTGAGGCCATTCTTGAAGATGACATATCAGATGAACAGAAAGCAAGAATCGCCAAGAAGCTGGGAGAAGCAGATAAGTGTCTGGTTGATGGTGCTGATGAATACTTGCAGCTTCTTGACACAGTCAGCACTACAATGCAAGCTTTTTGTAACATGCCGGAAGGATTTGCTTATGGGAGTTAG 1029 0.448 MAPIMQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQRKGGYPCPPYKIIVLDEADSMTEDAQACLNIRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSNRILYICNEEGLNLDAKALSTLSSISQGDLRRAITYLQSAARLFGSSISSEDLISVSGVVPAEVVEAILKACKSGNFDSANKEVNNFIAEGYPASQILTQLFEAILEDDISDEQKARIAKKLGEADKCLVDGADEYLQLLDTVSTTMQAFCNMPEGFAYGS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00564 342 SUPERFAMILY post-AAA+ oligomerization domain-like 241 325 IPR008921 GO:0003677|GO:0006260
Adu08g00564 342 PANTHER REPLICATION FACTOR C SUBUNIT 4 6 330 - -
Adu08g00564 342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 235 IPR027417 -
Adu08g00564 342 CDD HLD_clamp_RFC 175 234 - -
Adu08g00564 342 SMART AAA_5 41 175 IPR003593 -
Adu08g00564 342 Pfam Replication factor C C-terminal domain 242 325 IPR013748 -
Adu08g00564 342 Gene3D - 177 240 - -
Adu08g00564 342 CDD AAA 26 167 - -
Adu08g00564 342 Pfam ATPase family associated with various cellular activities (AAA) 45 173 IPR003959 GO:0005524|GO:0016887
Adu08g00564 342 Gene3D - 241 329 - -
Adu08g00564 342 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 6 330 - -
Adu08g00564 342 Gene3D - 2 174 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00564 Adu-Chr8 10159270 10162856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00564 1 338 Core DNA Replication Machinery Family AT1G21690 78.235 0.0 547
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00564 K10755 - gmx:100798331 603.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00564 08 10159270 10162856 Adu08g00564 08 10159270 10162856 ECH